genome.fa.s7162.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007162.1 Hibiscus syriacus cultivar Beakdansim tig00018772_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96733

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459--508	17	2.9	17	87	0	73	38	14	6	42	1.70
3734--3776	22	1.9	23	90	4	70	18	11	20	48	1.79
6529--6566	20	1.9	20	94	0	67	31	31	15	21	1.94
6529--6737	65	3.2	63	76	9	174	32	22	16	28	1.96
15035--15070	18	2.0	18	94	0	63	36	22	11	30	1.89
15043--15078	18	2.0	18	88	0	54	33	22	13	30	1.93
15053--15212	65	2.5	65	82	5	191	30	21	18	29	1.97
23881--23940	23	2.6	23	81	0	75	41	6	16	35	1.75
23968--24027	23	2.6	23	83	0	66	40	6	18	35	1.77
23868--24102	87	2.7	87	91	0	362	42	8	14	34	1.77
24055--24102	23	2.1	23	84	0	60	39	10	14	35	1.80
24108--24783	198	3.4	199	86	4	893	31	15	13	39	1.86
24842--24933	39	2.3	39	81	9	98	50	2	1	46	1.20
24885--24966	30	2.7	31	80	14	93	47	1	1	50	1.16
24905--24977	14	5.3	14	69	8	51	47	1	1	49	1.18
24905--24973	28	2.5	28	74	6	70	49	1	1	47	1.19
25647--25728	30	2.7	30	80	12	80	50	1	1	47	1.16
25647--25715	30	2.3	31	82	9	81	49	1	0	49	1.09
25762--25813	24	2.2	24	80	16	65	38	0	5	55	1.24
26152--26196	23	2.0	23	86	0	63	40	15	11	33	1.83
26049--26280	87	2.7	86	87	0	347	32	13	10	42	1.79
26152--26447	156	1.9	156	92	0	493	34	16	9	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26230--26349	23	5.2	23	91	0	186	35	19	8	37	1.82
26386--26447	23	2.7	23	89	0	88	33	19	6	40	1.77
27859--27905	22	2.1	23	84	4	60	63	10	4	21	1.43
32526--32576	19	2.7	19	93	0	93	27	21	27	23	1.99
35434--35512	22	3.6	22	69	16	65	29	20	20	30	1.97
35414--35528	43	2.7	43	90	1	178	28	19	20	31	1.97
35411--35527	20	5.6	20	68	13	74	28	18	21	31	1.97
41292--41342	19	2.7	19	96	0	93	29	21	27	21	1.99
46996--47059	31	2.1	31	94	2	112	34	17	28	20	1.95
49096--49160	31	2.1	31	85	0	85	23	24	13	38	1.91
71194--71237	22	2.0	22	100	0	88	18	31	22	27	1.97
73456--73683	117	1.9	117	92	3	379	46	10	13	29	1.75
75813--75879	30	2.2	29	76	10	71	22	23	2	50	1.62
77875--77910	3	12.0	3	88	11	56	36	0	0	63	0.94
78120--78179	16	3.8	16	95	0	102	30	18	26	25	1.98
79221--79287	32	2.1	32	100	0	134	29	5	0	64	1.17
80714--80780	23	2.9	23	90	0	107	35	25	20	17	1.95
81489--81539	20	2.5	20	96	0	93	33	19	11	35	1.88
83590--83689	21	4.8	20	76	12	62	28	19	17	36	1.93
83616--83711	21	4.6	21	82	2	95	29	16	18	35	1.93
86330--86379	23	2.2	23	96	0	91	26	20	16	38	1.92
90914--90977	31	2.0	32	90	3	103	32	18	7	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91883--91982	39	2.6	38	80	3	119	32	7	25	36	1.83
91885--91957	19	3.8	19	74	16	69	32	8	23	35	1.84
91904--91973	19	3.7	18	73	17	61	27	7	27	38	1.82

Tables:   1

The End!