genome.fa.s7184.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007184.1 Hibiscus syriacus cultivar Beakdansim tig00018897_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123457

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5244--5303	31	1.9	31	93	0	102	38	18	8	35	1.81
8015--8097	38	2.2	38	97	2	159	30	37	9	22	1.86
13912--13967	22	2.5	22	83	13	62	53	0	1	44	1.11
21854--21912	23	2.6	23	81	2	84	18	25	32	23	1.97
27676--27732	22	2.6	21	91	8	96	21	22	38	17	1.93
28265--28386	18	6.9	18	80	8	128	39	13	13	33	1.84
28265--28386	35	3.5	35	84	4	140	39	13	13	33	1.84
28266--28391	52	2.4	51	82	10	148	38	13	12	34	1.83
38574--38676	51	2.0	51	86	3	145	39	24	20	15	1.91
39253--39319	21	3.3	21	89	4	102	19	17	31	31	1.95
49379--49469	43	2.1	43	93	0	155	50	9	17	21	1.75
56840--56873	18	1.9	18	88	5	52	23	0	29	47	1.52
68624--68661	14	2.7	15	84	8	53	57	0	5	36	1.21
68740--68802	23	2.8	23	82	2	65	39	1	1	57	1.18
69518--69598	31	2.6	31	88	0	117	41	7	4	45	1.53
71431--71464	15	2.3	15	94	0	59	11	0	23	64	1.26
72968--73006	20	2.0	20	85	10	53	74	12	5	7	1.20
78652--78845	66	2.9	65	83	6	221	25	24	17	32	1.96
80305--80342	14	2.6	14	91	4	58	50	0	0	50	1.00
83139--83191	26	2.0	28	82	10	67	41	37	0	20	1.53
84898--85062	84	2.0	84	90	0	258	17	22	24	35	1.95
96094--96242	61	2.5	59	80	11	169	28	10	10	51	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96094--96317	60	3.7	60	81	9	172	25	10	12	51	1.71
113065--113089	2	12.5	2	100	0	50	48	0	0	52	1.00

Tables:   1

The End!