genome.fa.s7187.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007187.1 Hibiscus syriacus cultivar Beakdansim tig00018929_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  192224

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503--552	22	2.3	22	92	0	91	16	16	28	40	1.89
450--591	75	1.9	76	89	2	223	19	14	23	41	1.89
1320--1409	22	4.3	22	73	18	93	40	24	16	18	1.91
4972--4997	6	4.3	6	100	0	52	46	0	0	53	1.00
13939--13967	2	14.5	2	100	0	58	51	0	0	48	1.00
31324--31366	22	2.0	21	86	4	59	58	2	2	37	1.24
32274--32330	27	2.1	27	83	3	69	1	19	10	68	1.28
32723--32882	3	52.7	3	87	2	230	61	1	1	35	1.15
33040--33675	113	5.5	113	94	1	1002	28	20	14	37	1.91
34362--35011	50	12.9	50	96	1	1183	37	22	14	25	1.92
35576--35621	19	2.6	18	90	10	69	54	6	6	32	1.52
35594--35630	16	2.3	16	90	0	56	54	5	8	32	1.53
35949--36000	7	7.6	7	79	16	56	0	15	0	84	0.62
35948--35999	8	6.2	9	77	20	51	0	17	0	82	0.66
47307--47349	22	2.0	21	86	4	59	58	2	2	37	1.24
48258--48314	26	2.2	26	83	3	69	1	19	10	68	1.28
48707--48860	3	50.7	3	88	2	227	62	1	1	34	1.15
56345--56370	5	5.2	5	100	0	52	23	57	19	0	1.40
59642--59703	31	2.1	31	87	6	92	25	3	8	62	1.38
59639--59714	29	2.6	29	73	10	75	26	2	7	63	1.35
59651--59782	43	3.0	43	74	11	108	27	6	8	58	1.51
63350--63409	31	1.9	31	89	0	93	40	5	10	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63871--63919	18	2.6	19	78	18	57	63	0	0	36	0.95
63901--63994	14	6.8	14	67	18	54	56	1	1	41	1.13
63926--63990	24	2.5	24	85	12	76	55	1	0	43	1.09
63979--64029	12	4.3	12	76	18	54	66	1	0	31	1.03
66149--66253	34	3.3	34	82	15	120	59	1	0	39	1.09
66180--66233	16	3.1	19	76	17	71	61	3	0	35	1.14
66456--66558	50	2.1	50	88	3	154	18	31	33	17	1.94
67840--67954	54	2.1	54	95	0	203	19	7	21	51	1.72
70017--70068	18	2.9	18	91	0	86	28	32	19	19	1.96
70840--70897	20	2.7	20	86	10	71	25	20	20	32	1.97
70904--71008	46	2.3	45	80	6	115	28	18	17	36	1.93
78205--78342	21	6.7	21	69	6	68	36	25	17	20	1.94
78310--78502	20	9.6	20	83	5	228	35	26	18	19	1.95
78881--78949	31	2.2	33	89	5	106	11	23	17	47	1.80
79029--79138	21	5.8	20	74	17	108	45	18	24	11	1.83
79022--79138	41	3.1	38	81	14	145	46	17	25	11	1.81
79089--79145	14	3.7	14	75	20	60	43	22	24	8	1.81
79081--79161	33	2.5	33	95	0	144	46	22	22	8	1.78
79157--79283	19	7.1	19	71	20	78	11	25	18	44	1.83
79179--79235	14	3.7	14	75	20	60	8	24	22	43	1.81
79162--79243	33	2.5	33	100	0	164	9	23	19	47	1.79
79220--79283	20	3.2	20	82	6	85	12	26	14	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79219--79274	21	2.8	20	86	5	76	14	26	16	42	1.86
80973--81253	91	3.1	93	96	2	532	22	12	19	45	1.84
81301--81429	19	7.3	19	77	17	134	48	27	15	8	1.74
81336--81429	33	2.8	33	90	4	145	50	26	15	7	1.71
81387--81413	14	1.9	14	100	0	54	48	29	14	7	1.71
81301--81429	52	2.5	52	76	12	147	48	27	15	8	1.74
81425--81578	19	8.6	19	75	14	148	11	19	22	46	1.82
81447--81503	14	3.7	14	77	20	60	10	21	22	45	1.82
81430--81560	33	3.8	33	87	7	181	10	19	22	47	1.80
82036--82095	20	3.0	20	71	11	59	25	38	16	20	1.93
83496--83531	14	2.6	14	95	0	63	33	0	22	44	1.53
83638--83753	19	6.7	18	79	17	122	43	18	24	13	1.86
83638--83753	52	2.2	52	96	3	216	43	18	24	13	1.86
83743--84017	19	15.7	19	76	19	294	14	22	17	45	1.84
83743--84017	52	5.2	52	86	7	371	14	22	17	45	1.84
83729--83903	85	2.1	85	86	2	244	17	22	17	42	1.89
83800--83965	33	4.8	34	87	10	257	13	22	16	46	1.82
83749--83912	85	1.9	86	97	1	312	14	21	17	46	1.83
83800--83989	72	2.7	71	93	5	318	13	23	16	46	1.82
83743--83989	72	3.5	72	84	10	298	14	23	16	45	1.84
83749--84031	33	8.2	33	74	18	136	13	22	17	46	1.83
83743--84050	52	5.9	51	82	9	259	14	22	18	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86308--86332	12	2.1	12	100	0	50	0	28	0	72	0.86
86507--86553	24	2.0	24	87	8	69	38	21	14	25	1.92
87244--87472	20	11.4	20	87	1	253	19	17	25	36	1.94
96057--96134	20	4.0	20	80	8	81	19	26	24	29	1.98
96106--96145	19	2.1	19	90	0	62	22	25	27	25	2.00
116116--116216	31	2.9	35	80	15	129	44	8	5	40	1.60
126907--127050	35	4.1	36	83	8	179	19	22	17	40	1.91
126907--127050	71	2.0	71	89	0	216	19	22	17	40	1.91
137811--137858	24	2.0	24	91	0	78	22	35	10	31	1.88
141050--141138	3	29.7	3	97	0	169	33	1	0	65	1.00
142642--142680	13	3.0	13	82	10	53	38	0	2	58	1.12
148148--148185	16	2.5	15	83	8	51	81	0	18	0	0.69
148152--148190	19	2.1	19	85	9	53	82	0	17	0	0.68
150392--150808	83	5.0	84	92	2	698	27	14	21	36	1.92
150392--150805	167	2.5	166	92	3	701	27	14	21	36	1.92
151542--152092	225	2.5	225	94	2	959	37	12	20	29	1.90
151545--152092	113	4.9	112	95	2	935	37	12	20	29	1.90
152409--152478	3	23.7	3	91	2	115	32	1	1	64	1.11
153981--154019	13	3.0	13	82	10	53	38	0	2	58	1.12
154024--154190	90	1.9	89	80	6	194	40	11	11	36	1.78
162612--162659	25	1.9	25	91	0	78	25	6	16	52	1.67
167753--167820	31	2.2	31	82	12	86	66	2	10	20	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167962--168577	333	1.8	337	88	3	938	43	8	4	43	1.55
168849--169011	88	1.9	88	92	0	272	38	9	23	29	1.86
182661--182696	18	2.1	17	89	5	54	44	2	0	52	1.15
182595--182819	124	1.8	122	79	9	260	48	2	0	48	1.19
182666--182768	20	5.4	19	66	23	56	51	0	0	46	1.14
182772--182857	27	3.1	26	77	12	75	47	1	1	50	1.16
182809--182877	19	3.6	18	71	21	52	49	1	1	47	1.19
184617--184664	20	2.4	20	75	0	51	37	20	8	33	1.83

Tables:   1

The End!