genome.fa.s7193.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007193.1 Hibiscus syriacus cultivar Beakdansim tig00018958_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71932

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10983--11042	24	2.5	24	83	0	75	5	15	38	41	1.68
15913--16015	53	1.9	53	86	0	143	38	16	16	28	1.90
16199--16244	22	2.1	22	91	0	74	34	10	6	47	1.64
16202--16260	22	2.7	22	77	12	59	33	15	8	42	1.77
16740--16792	21	2.5	21	93	0	88	32	22	11	33	1.90
24052--24115	32	2.0	32	87	6	94	39	1	6	53	1.36
26121--26145	2	12.5	2	100	0	50	52	0	0	48	1.00
29056--29157	53	1.9	53	91	0	168	41	20	15	22	1.90
33170--33215	21	2.1	22	88	11	69	56	0	2	41	1.11
37394--37749	56	6.5	56	87	3	508	33	18	12	36	1.88
37421--37749	109	3.0	108	89	5	466	33	18	12	35	1.88
37394--37744	165	2.1	164	87	3	499	33	18	12	35	1.89
37660--37746	27	3.1	27	63	18	70	32	18	10	39	1.84
38161--38211	19	2.6	20	84	6	68	17	31	17	33	1.94
39856--39973	56	2.1	56	98	1	227	29	24	20	25	1.99
43665--44792	113	10.0	113	89	5	1461	28	19	14	37	1.91
43666--44793	340	3.3	337	88	4	1637	28	19	14	37	1.91
45197--45251	22	2.5	22	87	0	83	36	14	14	34	1.87
47753--48274	92	5.8	92	90	5	805	35	23	13	27	1.93
47765--48274	175	2.8	180	91	3	807	35	24	12	27	1.92
50530--50560	15	2.0	16	93	6	55	0	19	0	80	0.71
50854--50889	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53143--53175	7	4.7	7	85	14	50	54	12	18	15	1.71
59736--60213	55	8.7	55	87	4	673	34	18	12	35	1.88
59736--60214	111	4.4	112	91	3	717	34	18	12	35	1.88
63465--63540	22	3.6	22	92	5	122	30	19	15	34	1.93
68031--68066	15	2.5	15	86	4	56	30	5	11	52	1.59
69085--69124	20	2.1	20	90	9	66	67	5	0	27	1.11
71594--71646	3	17.7	3	88	7	81	33	0	1	64	1.05
71588--71644	23	2.4	24	85	8	80	33	1	1	63	1.15

Tables:   1

The End!