genome.fa.s7246.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007246.1 Hibiscus syriacus cultivar Beakdansim tig00019200_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  322346

Tables:   1   2   

This is table  1  of  2  ( 200 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
706--744	2	19.5	2	100	0	78	48	0	0	51	1.00
1373--1433	30	2.0	30	90	0	95	21	24	16	37	1.93
5520--5577	24	2.4	24	80	5	73	65	8	6	18	1.43
5528--5583	28	2.0	28	89	6	87	64	10	8	16	1.49
5525--5592	28	2.6	27	76	19	72	63	10	8	17	1.51
6740--6862	39	2.9	43	83	12	173	43	17	8	30	1.78
9271--9330	22	2.7	22	82	7	77	73	0	3	23	0.98
9354--9806	36	12.8	36	80	9	452	43	9	2	44	1.51
9364--9767	68	5.8	67	84	7	479	42	9	2	45	1.51
10150--10188	16	2.4	16	95	0	69	28	23	15	33	1.95
11080--11145	22	3.0	22	86	0	96	24	31	15	28	1.95
14081--14143	17	3.6	18	82	6	85	74	0	3	22	0.96
14082--14143	4	14.5	4	80	15	63	74	0	3	22	0.96
14082--14143	13	4.8	12	81	13	63	74	0	3	22	0.96
14084--14157	13	5.5	13	74	19	55	68	2	4	24	1.19
14165--14579	35	11.8	36	80	9	414	43	9	3	44	1.52
14252--14276	12	2.1	12	100	0	50	48	0	0	52	1.00
14165--14579	68	5.9	69	83	7	430	43	9	3	44	1.52
14165--14573	104	3.9	104	87	4	504	42	9	3	44	1.51
18391--18454	32	2.0	32	84	0	83	48	12	7	31	1.69
20102--20180	28	2.8	28	86	1	104	17	34	27	20	1.95
20257--20294	20	1.9	20	94	0	67	34	21	13	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20412--20473	20	3.3	19	80	10	74	59	0	38	1	1.07
20417--20468	23	2.3	22	81	12	61	63	0	34	1	1.06
20575--20618	21	2.1	21	91	0	70	27	2	15	54	1.53
20595--20657	28	2.2	30	91	5	103	30	1	12	55	1.47
20646--20670	5	5.0	5	100	0	50	40	0	0	60	0.97
21152--21209	19	3.0	19	77	5	71	44	1	6	46	1.40
21342--21487	65	2.3	64	82	10	165	47	7	4	41	1.51
24488--24529	11	3.8	11	84	12	59	28	2	0	69	1.01
24487--24529	16	2.6	17	75	20	54	30	2	0	67	1.03
24592--24731	66	2.2	61	87	6	190	36	23	5	34	1.79
26606--27179	112	5.1	112	90	0	853	45	14	13	26	1.82
26605--27136	223	2.4	224	91	0	823	46	14	13	25	1.80
27054--27870	182	4.5	182	93	0	1364	42	12	15	29	1.84
28928--29385	112	4.1	112	93	1	756	46	14	14	25	1.82
28928--29398	225	2.1	224	91	1	757	45	14	14	25	1.82
29256--29712	182	2.5	183	89	1	704	44	13	14	27	1.83
30331--30378	23	2.1	23	88	0	69	39	18	6	35	1.76
32111--32173	21	3.0	22	82	13	62	42	3	6	47	1.44
32146--32213	24	2.8	24	80	8	93	50	2	4	42	1.37
32143--32208	21	3.0	21	75	16	62	50	4	3	42	1.38
32248--32289	22	1.9	22	95	0	75	40	2	9	47	1.49
32594--32637	21	2.1	21	82	0	52	18	43	9	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35006--35081	36	2.1	36	87	4	109	44	10	0	44	1.38
34997--35078	36	2.4	32	74	16	76	41	10	0	47	1.39
35114--35183	34	2.0	35	83	2	88	45	8	2	42	1.49
35475--35513	21	1.9	20	94	5	69	0	41	0	58	0.98
35475--35511	11	3.5	11	79	20	51	0	40	0	59	0.97
38385--38439	18	3.1	18	69	15	51	7	27	1	63	1.31
39123--39170	24	2.0	24	100	0	96	33	25	8	33	1.86
44419--44453	15	2.4	15	90	4	54	62	0	0	37	0.95
44419--44453	7	4.9	7	86	6	52	62	0	0	37	0.95
46853--46928	13	5.3	13	77	17	71	15	44	22	17	1.86
46831--46907	18	4.6	18	81	15	110	16	50	20	11	1.76
46835--46913	31	2.5	31	95	0	149	16	48	21	13	1.81
46889--46935	8	6.5	8	77	22	59	14	38	25	21	1.92
46905--46936	7	4.4	7	92	7	55	12	34	28	25	1.92
46889--46935	15	3.3	15	91	5	71	14	38	25	21	1.92
48225--48259	18	1.9	18	88	0	52	54	0	17	28	1.43
55157--55188	3	11.3	3	87	12	50	65	0	0	34	0.93
55359--55469	55	2.1	53	84	3	141	26	19	18	35	1.95
55446--56258	52	15.6	52	94	0	1365	29	26	15	28	1.96
56254--56533	55	5.1	55	91	1	474	28	28	15	28	1.96
56254--56533	108	2.6	110	93	2	492	28	28	15	28	1.96
65521--65552	3	11.3	3	87	12	50	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68042--68110	10	6.6	10	77	14	59	24	27	27	20	1.99
69084--69114	15	2.1	15	100	0	62	32	19	29	19	1.96
72267--72297	15	2.1	15	100	0	62	32	19	29	19	1.96
74171--74205	17	1.9	19	88	11	56	40	0	2	57	1.14
74203--74320	27	4.3	27	76	3	110	43	4	2	50	1.35
74279--74338	25	2.3	27	88	5	88	41	0	0	58	0.98
75907--75964	16	3.6	17	77	11	50	60	0	5	34	1.19
84215--84243	13	2.1	14	93	6	51	51	0	13	34	1.42
84820--85000	95	1.9	96	83	3	240	33	16	23	27	1.96
85482--85757	45	6.1	45	87	3	369	43	7	15	32	1.76
85482--85757	135	2.0	135	90	2	439	43	7	15	32	1.76
90851--91002	45	3.4	45	91	0	241	40	9	18	31	1.82
91538--91978	111	3.9	111	82	6	451	29	15	23	31	1.96
91879--92249	128	2.8	130	82	8	430	28	16	25	29	1.97
97789--97822	16	2.1	16	88	0	50	50	0	0	50	1.00
99457--99535	3	26.3	3	84	5	97	58	0	1	40	1.06
99457--99552	21	4.6	21	87	7	133	56	0	2	41	1.11
99457--99552	27	3.6	27	82	2	95	56	0	2	41	1.11
99803--100428	113	5.5	112	82	8	678	30	19	12	37	1.89
99872--100433	116	4.9	116	85	5	750	29	19	12	38	1.88
101223--101601	94	4.0	94	94	0	661	34	21	14	30	1.93
109961--109992	15	2.1	15	94	0	55	46	9	18	25	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117864--117897	16	2.1	16	88	0	50	50	0	0	50	1.00
119520--119585	3	22.0	3	81	6	80	59	0	1	39	1.07
121533--121580	15	3.5	15	73	26	61	45	29	0	25	1.53
121523--121584	25	2.5	25	97	0	115	50	29	0	20	1.49
123547--123586	21	1.9	21	89	0	62	10	25	40	25	1.86
123567--123629	20	2.9	21	79	9	65	15	25	34	23	1.95
135152--135203	19	2.7	19	90	0	77	23	13	17	46	1.83
137062--137162	47	2.1	47	90	5	159	25	16	7	49	1.73
137327--137370	20	2.2	20	91	0	70	25	20	18	36	1.95
137530--137646	61	1.9	61	85	0	162	31	29	15	23	1.95
140434--140476	21	2.0	22	86	9	61	23	20	4	51	1.66
141542--141579	19	2.1	18	85	14	51	44	2	0	52	1.14
142484--142546	32	2.0	32	87	3	92	47	15	6	30	1.71
143604--143649	12	3.6	12	81	16	56	45	17	19	17	1.85
143610--143650	12	3.1	13	80	19	57	46	14	17	21	1.84
145983--146081	33	3.0	33	94	1	164	32	7	15	45	1.73
146067--146121	13	4.2	13	75	13	58	34	3	12	49	1.59
146319--146373	21	2.6	21	91	0	92	20	27	23	29	1.99
146560--146593	18	1.9	18	88	5	52	41	11	8	38	1.73
146541--146595	15	3.5	15	73	9	56	36	12	7	43	1.71
149132--149164	2	16.5	2	100	0	66	48	0	0	51	1.00
149391--149435	2	22.5	2	100	0	90	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150940--150969	12	2.4	13	88	11	53	60	0	0	40	0.97
152405--152487	12	6.7	12	77	20	73	73	2	3	20	1.10
152418--152487	4	16.8	4	75	21	56	71	2	4	21	1.16
152405--152482	29	2.8	29	78	21	87	74	1	3	20	1.05
152501--152950	36	12.5	35	67	13	164	46	5	3	45	1.41
152500--152954	73	6.3	71	73	14	292	46	5	3	45	1.41
153554--154324	84	9.4	82	77	7	740	23	20	25	30	1.99
153498--154324	165	5.0	165	86	2	1108	23	20	24	30	1.99
153510--154352	331	2.6	328	84	5	1142	23	20	25	30	1.99
159519--159543	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1   2