genome.fa.s7246.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007246.1 Hibiscus syriacus cultivar Beakdansim tig00019200_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  322346

Tables:   1   2   

This is table  2  of  2  ( 200 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160801--160888	7	12.4	7	71	20	58	76	1	3	19	1.00
160801--160895	18	4.9	18	72	16	59	75	2	3	18	1.03
160810--160893	4	20.8	4	74	23	70	73	2	3	20	1.09
160801--160896	15	6.4	15	73	21	78	76	2	3	18	1.03
160908--161354	36	12.5	35	69	14	173	46	5	3	45	1.41
160894--160990	36	2.6	37	80	4	115	47	7	1	44	1.37
160907--161198	108	2.8	104	75	14	259	46	4	3	46	1.39
160985--161358	72	5.1	73	79	11	331	46	5	3	44	1.42
163455--163976	53	9.8	53	91	0	819	19	26	17	36	1.94
165314--165415	8	12.0	8	79	14	107	0	24	0	75	0.80
165315--165414	9	11.6	9	79	17	106	0	23	0	77	0.78
165315--165415	25	4.0	24	78	13	96	0	23	0	76	0.79
174225--174255	9	3.4	9	100	0	62	0	64	22	12	1.27
174216--174255	18	2.2	18	90	0	62	2	60	22	15	1.47
178532--178687	65	2.4	65	88	3	217	31	17	23	28	1.97
179029--179062	12	2.7	13	86	9	52	41	5	8	44	1.60
181273--181364	44	2.1	44	87	0	130	26	18	22	32	1.97
187167--187291	64	2.0	64	84	6	164	32	16	24	27	1.96
188767--188891	31	4.0	31	94	2	207	37	23	19	20	1.94
189483--189643	64	2.5	63	84	8	191	26	21	18	34	1.96
192826--193043	31	7.0	31	97	1	393	38	22	19	19	1.94
193635--193795	64	2.5	63	81	5	171	27	20	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195839--195869	15	2.1	15	93	0	53	35	6	9	48	1.62
196280--196327	19	2.5	19	76	13	53	50	2	0	47	1.12
196777--196809	17	1.9	17	93	0	57	24	0	3	72	0.98
197625--197655	4	8.0	4	92	7	55	77	0	0	22	0.77
197925--197963	19	2.1	19	100	0	78	25	10	10	53	1.66
198128--198168	12	3.4	12	79	0	55	70	4	24	0	1.06
198325--198351	3	9.0	3	100	0	54	66	0	0	33	0.92
199259--199620	180	2.0	181	98	1	701	37	20	25	16	1.93
203595--203689	39	2.4	39	83	0	127	12	31	24	31	1.92
203653--203796	39	3.7	39	73	3	119	23	26	18	31	1.97
204158--204195	2	19.0	2	100	0	76	50	0	0	50	1.00
206786--206909	62	2.0	62	100	0	248	45	8	4	41	1.55
209471--209507	14	2.6	14	100	0	74	72	13	8	5	1.24
214361--214452	2	49.0	2	69	12	52	47	0	0	52	1.00
214469--214513	13	3.5	13	87	3	65	15	15	51	17	1.77
218706--218789	39	2.1	40	93	6	145	41	11	17	28	1.85
219456--219513	29	2.1	28	81	15	68	44	13	17	24	1.85
219585--219646	25	2.5	25	89	2	99	29	16	14	40	1.88
219603--219700	39	2.4	41	80	8	121	31	13	12	42	1.81
226678--226708	15	2.1	15	93	0	53	54	0	0	45	0.99
237879--237922	23	1.9	23	81	9	54	38	2	15	43	1.60
238993--239021	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240810--240843	2	17.0	2	100	0	68	50	0	0	50	1.00
243599--243636	20	1.9	20	88	0	58	34	23	28	13	1.92
251180--251211	16	1.9	17	93	6	57	25	18	6	50	1.70
253986--254040	27	2.0	27	92	0	92	45	5	20	29	1.73
255228--255283	29	2.0	28	89	3	85	39	12	10	37	1.78
255168--255489	66	4.9	66	76	11	268	39	12	15	32	1.84
255163--255493	129	2.5	129	80	7	375	38	12	14	34	1.84
255560--256045	36	13.9	36	74	12	196	44	8	15	32	1.76
255789--256056	35	7.7	35	78	14	211	42	7	16	33	1.75
255807--256051	66	3.6	67	77	11	237	44	6	15	33	1.72
262832--262871	20	2.0	20	90	4	64	0	5	12	82	0.82
262839--262880	10	4.3	10	87	3	59	0	2	9	88	0.61
262839--262880	17	2.5	16	85	11	57	0	2	9	88	0.61
269681--269723	2	21.5	2	100	0	86	51	0	0	48	1.00
269994--270031	17	2.2	17	86	9	51	21	10	0	68	1.19
269993--270032	18	2.3	17	82	4	53	20	10	0	70	1.16
274354--274394	21	2.0	21	85	9	57	63	24	0	12	1.28
286787--286825	20	1.9	20	84	5	51	35	17	20	25	1.95
287830--288050	49	4.6	49	76	5	180	32	13	22	32	1.93
287937--288147	49	4.4	48	71	10	112	32	12	22	32	1.91
287881--288164	48	6.0	47	71	14	170	32	13	22	31	1.92
289543--289580	17	2.2	17	86	9	51	18	13	0	68	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289577--289619	20	2.2	19	83	8	50	13	9	0	76	1.01
290354--290380	14	1.9	14	100	0	54	37	3	0	59	1.15
290688--290743	10	5.4	10	79	8	58	71	5	3	19	1.21
290688--290743	21	2.7	20	78	8	58	71	5	3	19	1.21
297840--297903	29	2.2	30	82	2	76	37	4	23	34	1.76
299279--299403	47	2.8	45	85	7	164	39	8	21	31	1.82
299782--299806	12	2.1	12	100	0	50	28	16	24	32	1.96
309645--309675	3	10.3	3	100	0	62	67	0	0	32	0.91
310967--311025	14	4.2	14	91	0	91	10	13	16	59	1.61
310964--311045	38	2.2	38	84	4	103	12	12	17	58	1.63
310968--311045	14	5.9	14	77	11	83	11	12	16	58	1.62
310996--311042	24	2.0	24	86	0	67	14	12	14	57	1.66
315790--315871	43	1.9	43	82	5	103	23	3	18	54	1.59
318256--318314	3	19.3	3	89	3	91	66	3	0	30	1.08

Tables:   1   2

The End!