genome.fa.s7252.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007252.1 Hibiscus syriacus cultivar Beakdansim tig00019210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96306

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2392--2426	18	1.9	18	94	0	61	17	48	20	14	1.81
3719--3936	110	2.0	110	91	3	359	39	10	16	33	1.82
10290--10355	3	21.7	3	77	14	64	34	1	3	60	1.21
10290--10355	25	2.6	25	79	15	73	34	1	3	60	1.21
12372--12400	15	1.9	15	100	0	58	17	0	6	75	1.01
15421--15473	27	2.0	27	96	0	97	47	0	13	39	1.43
17393--17511	46	2.6	46	82	0	130	31	19	19	29	1.96
17384--17511	23	5.6	23	72	10	91	32	21	17	28	1.96
22143--22213	26	2.5	28	82	8	92	45	15	0	39	1.46
22143--22188	22	2.1	22	84	15	60	47	13	0	39	1.42
22157--22240	30	2.8	31	73	10	84	46	14	1	38	1.52
22339--22436	33	3.0	33	89	0	151	39	14	20	25	1.90
23036--23095	26	2.4	25	79	20	63	76	6	5	11	1.13
24092--24219	23	5.6	23	73	7	107	24	14	24	37	1.92
24092--24219	46	2.8	46	81	0	157	24	14	24	37	1.92
25373--25493	23	5.3	23	76	7	120	24	17	23	34	1.96
25373--25493	46	2.6	46	86	2	163	24	17	23	34	1.96
33663--33702	2	20.0	2	100	0	80	50	0	0	50	1.00
33969--34176	105	2.0	105	95	0	371	44	20	11	24	1.84
43787--43844	28	2.1	28	100	0	116	31	29	3	36	1.74
50646--50845	37	5.3	38	75	17	147	44	4	6	45	1.48
50646--51034	38	10.0	37	71	18	213	44	4	5	45	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50620--50847	75	3.1	73	80	9	214	43	3	7	45	1.49
50834--50863	15	1.9	16	93	6	53	40	0	6	53	1.27
50721--50974	127	2.0	127	98	0	490	44	5	5	44	1.50
50806--50882	25	3.0	25	72	7	73	45	2	5	46	1.39
50849--51034	39	5.0	37	78	8	171	44	4	5	45	1.48
72901--72966	24	2.8	24	93	4	109	27	21	28	22	1.99
76657--76697	8	5.1	8	91	8	66	63	0	26	9	1.25
78500--78548	3	17.0	3	87	12	68	28	0	0	71	0.86
78505--78548	13	3.5	13	90	3	72	29	0	0	70	0.88
78503--78556	25	2.2	25	90	6	83	25	1	0	72	0.95
80585--80618	17	1.9	18	88	5	52	38	2	2	55	1.30
84206--84243	11	3.4	11	89	7	58	71	10	13	5	1.30
85798--85939	36	4.0	36	77	11	159	28	20	13	37	1.90
85798--85932	71	1.9	72	86	4	193	30	20	14	34	1.92
85899--86201	105	2.9	105	93	1	500	29	19	10	39	1.85
86470--86523	27	2.0	27	89	7	83	25	12	14	46	1.81
86675--86718	15	2.9	15	93	0	70	29	22	4	43	1.73
87064--87315	130	1.9	129	89	2	380	26	30	18	24	1.98
87506--87554	3	17.0	3	87	12	68	28	0	0	71	0.86
87511--87554	13	3.5	13	90	3	72	29	0	0	70	0.88
87509--87562	25	2.2	25	90	6	83	25	1	0	72	0.95
89568--89601	17	1.9	18	88	5	52	38	2	2	55	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90502--90548	24	2.0	24	100	0	94	57	25	8	8	1.57

Tables:   1

The End!