Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007256.1 Hibiscus syriacus cultivar Beakdansim tig00019229_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92300

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1721--1776
20
2.8
20
69
12
53
53
7
14
25
1.66
2128--2241
32
3.6
32
80
9
117
26
19
18
35
1.95
2366--2399
10
3.4
10
91
0
50
38
0
14
47
1.45
6396--6449
21
2.5
22
75
6
56
44
5
18
31
1.73
6525--6638
32
3.6
32
81
9
126
26
19
19
35
1.95
6763--6796
10
3.4
10
91
0
50
38
0
14
47
1.45
10926--11030
32
3.3
31
86
4
147
25
20
21
32
1.97
12328--12391
22
2.9
22
92
0
110
23
17
23
35
1.95
13871--13898
2
14.0
2
100
0
56
50
0
0
50
1.00
13993--14017
2
12.5
2
100
0
50
52
0
0
48
1.00
14957--14982
8
3.2
8
100
0
52
26
0
0
73
0.84
15972--16029
25
2.3
25
100
0
116
43
10
17
29
1.82
16717--16773
17
3.2
17
72
18
53
45
7
3
43
1.48
17681--17721
22
1.9
21
90
5
64
70
4
0
24
1.06
20174--20222
2
24.5
2
100
0
98
48
0
0
51
1.00
20325--20366
20
2.1
20
95
0
75
30
30
9
28
1.89
20371--20501
57
2.3
57
90
0
199
35
24
13
25
1.93
20783--20811
13
2.1
14
93
6
51
13
20
17
48
1.81
21070--21122
2
26.5
2
96
0
79
50
5
0
43
1.25
21189--21215
14
1.9
14
100
0
54
55
0
0
44
0.99
21230--21322
42
2.2
42
77
5
100
34
6
12
46
1.68
21545--21625
13
6.2
13
77
12
69
46
1
2
49
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21534--21624
33
2.9
31
71
20
82
47
1
2
49
1.21
21999--22107
30
3.6
30
85
3
148
34
12
11
41
1.79
23728--23768
15
2.7
15
85
7
57
34
0
19
46
1.50
27927--27974
14
3.6
14
80
11
64
70
10
0
18
1.15
27931--27974
13
3.4
13
81
9
54
70
11
0
18
1.16
28470--28531
21
3.0
21
80
17
67
66
1
0
32
1.02
30287--30320
16
2.1
16
100
0
68
26
5
17
50
1.69
33497--33551
24
2.3
24
83
0
65
16
10
16
56
1.67
33526--33575
14
3.6
13
91
5
64
16
14
18
52
1.76
33849--33948
24
4.3
23
84
6
130
9
8
21
62
1.50
36544--36594
21
2.4
21
86
0
75
49
21
19
9
1.77
40143--40169
7
3.9
7
100
0
54
11
0
44
44
1.39
40558--40591
17
1.9
18
94
5
61
26
0
8
64
1.22
40587--40646
13
4.8
13
74
15
63
28
1
0
70
0.97
40591--40628
16
2.4
16
91
8
60
26
2
0
71
1.00
40599--40651
21
2.5
21
84
0
70
26
1
0
71
0.96
40559--40632
8
9.1
8
71
14
53
25
1
4
68
1.15
42800--42825
7
3.7
7
100
0
52
88
0
0
11
0.52
49855--49902
23
2.1
23
84
3
62
41
0
10
47
1.37
50155--50199
22
2.2
20
84
15
56
37
0
0
62
0.96
50155--50197
20
2.1
21
83
12
54
37
0
0
62
0.95
55065--55126
9
6.7
9
77
12
63
22
3
0
74
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65957--65990
17
2.0
18
88
11
54
44
2
5
47
1.42
74488--74539
15
3.2
16
76
17
63
30
30
23
15
1.95
83633--83726
40
2.4
40
84
7
129
38
4
7
50
1.50
84589--84658
29
2.4
30
92
4
124
48
2
18
30
1.62
86892--86946
15
3.4
16
80
7
67
14
30
29
25
1.95
86974--87025
17
3.2
17
72
10
54
19
26
30
23
1.98
87393--89183
7
258.6
7
91
5
813
10
24
47
18
1.79
87878--87941
13
4.7
14
85
12
62
3
0
54
42
1.16
87938--89362
7
208.6
7
93
5
2417
14
27
42
14
1.85
89340--92300
7
440.3
7
88
9
4222
12
1
44
41
1.50

Tables:   1

The End!