Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007294.1 Hibiscus syriacus cultivar Beakdansim tig00019400_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91173

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5234--5279
18
2.6
18
96
3
85
8
50
10
30
1.68
8324--8380
25
2.3
25
93
6
98
29
17
38
14
1.89
15437--15510
26
2.8
25
81
4
76
17
18
0
63
1.31
15448--15491
21
2.1
21
91
4
72
18
18
0
63
1.31
16984--17009
10
2.6
10
100
0
52
19
19
11
50
1.77
21971--22023
13
4.2
13
76
11
56
64
0
16
18
1.30
24255--24307
24
2.2
24
96
0
97
37
15
24
22
1.92
25698--25731
6
5.5
6
86
6
50
2
11
2
82
0.89
25698--25731
13
2.8
12
86
8
50
2
11
2
82
0.89
25892--25959
13
5.2
13
74
13
59
63
0
17
19
1.32
25918--25964
13
3.2
16
82
17
66
61
0
21
17
1.34
31226--31259
14
2.4
14
90
0
50
79
2
11
5
1.02
31274--31320
19
2.3
20
75
7
51
72
8
6
12
1.27
41957--42024
29
2.3
29
97
0
127
41
1
16
41
1.57
46670--46708
18
2.2
18
100
0
78
38
28
5
28
1.78
49942--49966
2
12.5
2
100
0
50
52
0
0
48
1.00
52306--52364
22
2.8
21
75
7
66
23
13
15
47
1.81
52867--52905
14
2.7
15
88
4
53
25
10
7
56
1.59
53915--53954
12
3.3
12
83
13
55
10
47
25
17
1.78
64127--64188
3
20.7
3
77
12
65
58
3
1
37
1.24
64568--64734
91
1.8
92
88
1
255
22
19
14
43
1.87
65842--65875
17
2.0
17
88
11
52
11
11
0
76
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65834--65889
25
2.3
24
84
6
76
7
16
1
75
1.11
77903--77954
3
17.3
3
100
0
104
65
0
0
34
0.93
86961--86989
15
2.0
15
93
6
51
55
0
0
44
0.99
87319--87372
23
2.5
21
78
6
54
29
22
14
33
1.94
87657--87841
74
2.5
73
89
5
264
28
28
21
22
1.99
90496--90540
21
2.1
22
87
4
65
17
0
15
66
1.25

Tables:   1

The End!