genome.fa.s7298.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007298.1 Hibiscus syriacus cultivar Beakdansim tig00019423_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  730416

Tables:   1   2   3   

This is table  1  of  3  ( 350 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--11343	7	1661.9	7	92	6	16006	39	42	3	14	1.63
26--13005	7	1901.7	7	89	6	9854	36	42	6	14	1.71
12941--13039	7	14.4	7	79	8	96	29	53	14	3	1.55
12939--13034	20	4.7	21	91	6	144	29	53	14	3	1.56
13044--13302	7	37.9	7	87	9	290	18	52	26	1	1.56
13166--13193	12	2.3	12	100	0	56	25	57	0	17	1.41
13303--13516	7	30.7	7	96	0	331	28	52	4	14	1.60
13512--13552	7	5.9	7	100	0	82	14	43	26	14	1.84
13548--13574	7	3.9	7	100	0	54	14	44	25	14	1.84
13512--13559	21	2.3	22	92	7	82	14	43	27	14	1.84
16086--16119	16	2.1	16	94	0	59	32	8	26	32	1.87
25157--25301	27	5.4	27	72	10	84	51	21	1	26	1.56
25261--25304	18	2.5	18	81	3	54	47	29	0	22	1.51
25345--25412	9	7.6	9	77	11	59	51	26	8	13	1.70
25345--25431	18	4.8	18	69	5	59	49	26	8	16	1.73
25340--25429	45	2.0	45	93	0	153	48	26	7	16	1.73
25363--25438	27	2.8	27	77	0	80	50	26	6	17	1.70
25340--25442	45	2.3	45	89	3	145	49	25	6	18	1.72
25453--25498	18	2.6	18	82	6	58	58	21	2	17	1.49
25469--25516	8	5.8	8	82	5	51	52	25	0	22	1.48
31505--31537	12	2.8	12	95	0	57	9	6	48	36	1.60
31612--31649	2	19.5	2	94	5	69	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31722--31748	6	4.5	6	100	0	54	0	62	18	18	1.32
32886--32927	22	1.9	22	90	0	66	35	0	4	59	1.19
32910--32964	27	2.0	28	85	7	76	38	0	1	60	1.08
33439--33498	7	8.6	7	87	5	86	28	48	13	10	1.74
33474--33745	7	38.6	7	88	7	156	24	51	18	5	1.66
33580--33682	50	2.1	50	96	0	188	19	55	21	3	1.59
33573--33689	57	2.1	57	93	0	198	19	54	21	4	1.61
33663--33858	7	28.0	7	98	0	248	23	46	15	14	1.82
33855--33916	7	8.9	7	100	0	124	14	43	27	14	1.84
33806--33915	21	5.2	21	92	7	124	13	43	28	14	1.83
40566--40637	9	8.1	9	76	10	60	45	27	1	25	1.61
40481--40635	27	5.7	27	74	10	122	50	22	1	25	1.56
40680--40747	9	7.6	9	77	11	59	51	26	8	13	1.70
40680--40766	18	4.8	18	69	5	59	49	26	8	16	1.73
40675--40764	45	2.0	45	93	0	153	48	26	7	16	1.73
40698--40773	27	2.8	27	77	0	80	50	26	6	17	1.70
40675--40817	45	3.2	45	83	5	146	53	22	5	18	1.65
40788--40844	17	3.3	17	82	2	51	54	24	1	19	1.54
40788--40847	9	6.9	9	73	7	52	53	23	1	21	1.55
40805--40852	8	5.8	8	80	7	51	50	25	0	25	1.50
40805--40850	17	2.7	17	86	0	65	52	21	0	26	1.47
45394--45426	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46873--46907	12	2.9	12	95	0	61	8	8	48	34	1.64
46925--47018	2	50.0	2	70	12	56	47	0	0	52	1.00
48246--48287	22	1.9	22	90	0	66	35	0	4	59	1.19
48270--48324	27	2.0	28	85	7	76	38	0	1	60	1.08
51170--51208	19	2.1	19	100	0	78	10	58	0	30	1.31
55180--55223	21	2.1	21	95	0	79	52	4	6	36	1.49
64002--64037	17	2.2	16	90	5	54	52	2	2	41	1.30
74530--74691	40	4.1	40	93	0	288	23	16	27	33	1.95
76997--77081	30	2.8	30	79	10	93	42	4	16	36	1.69
87740--87777	20	1.9	20	88	0	58	23	34	31	10	1.89
88747--88804	29	2.0	29	93	3	100	17	20	13	48	1.81
88824--88855	12	2.7	12	95	0	55	37	25	3	34	1.72
89167--89343	64	2.8	64	82	1	194	25	19	21	33	1.97
89230--89391	64	2.5	64	84	4	193	26	22	19	32	1.97
95464--95526	29	2.2	29	100	0	126	17	20	17	44	1.87
95543--95584	12	3.4	12	84	15	59	42	23	4	28	1.74
95885--96060	64	2.8	64	81	5	196	26	18	21	33	1.96
95947--96108	64	2.6	63	85	4	193	26	21	19	32	1.97
96940--97157	103	2.1	103	95	0	400	24	12	24	38	1.90
97174--97236	23	2.7	23	87	4	92	20	26	26	25	1.99
100684--100733	21	2.4	21	100	0	100	32	32	18	18	1.94
100767--100803	19	1.9	19	88	0	56	24	35	29	10	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101391--101522	3	44.0	3	88	0	183	37	1	0	61	1.05
102855--102900	13	3.5	13	82	11	58	41	2	0	56	1.11
103540--103589	24	2.1	23	85	3	64	34	2	2	62	1.18
114255--114337	14	6.6	12	73	20	71	79	0	20	0	0.73
114260--114339	15	5.6	15	75	20	82	80	0	20	0	0.72
114255--114339	23	3.8	22	72	24	54	80	0	20	0	0.72
114258--114341	27	3.2	27	79	12	95	79	0	20	0	0.73
114258--114338	42	1.9	43	90	7	130	80	0	19	0	0.72
115312--115555	82	3.0	83	92	2	411	28	13	21	36	1.91
116381--117236	113	7.6	113	94	0	1464	38	14	19	27	1.91
116964--117008	24	1.9	23	86	13	65	53	4	24	17	1.62
117496--117636	3	47.0	3	89	0	219	36	1	0	61	1.05
118981--119020	12	3.1	13	82	10	55	40	0	0	60	0.97
119228--119252	12	2.1	12	100	0	50	24	0	8	68	1.16
119735--119797	23	2.7	23	87	4	92	20	26	26	25	1.99
122051--122133	13	5.9	16	69	28	71	37	0	0	62	0.95
122051--122127	35	2.2	35	84	11	97	38	0	0	61	0.96
128730--128766	19	1.9	19	88	0	56	24	35	29	10	1.89
129248--129465	103	2.1	103	93	0	373	26	12	23	37	1.91
129482--129549	23	3.0	23	86	0	91	23	23	26	26	2.00
135635--135671	19	1.9	19	88	0	56	24	35	29	10	1.89
136235--136292	20	2.9	19	76	7	53	31	8	20	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136157--136370	103	2.1	103	95	0	383	24	13	24	36	1.92
136387--136454	23	3.0	23	80	4	75	23	23	26	26	2.00
138628--138677	23	2.2	23	88	0	73	36	8	20	36	1.82
138591--138749	87	1.8	87	93	0	273	40	11	14	33	1.83
138917--138968	21	2.5	21	96	0	95	38	15	17	28	1.90
140634--141278	182	3.5	180	84	3	801	26	16	13	43	1.85
144901--144929	14	2.0	15	93	6	51	62	6	6	24	1.45
150792--150844	20	2.7	20	77	11	72	28	32	15	24	1.95
150852--150895	21	2.1	21	95	0	79	25	25	13	36	1.92
150859--150904	21	2.2	21	84	0	56	30	26	15	28	1.96
150889--150933	20	2.2	20	92	0	72	44	22	15	17	1.86
151060--151110	22	2.3	22	89	0	84	23	43	11	21	1.85
151411--151452	20	2.1	20	86	0	57	14	19	21	45	1.85
155101--155140	14	2.9	14	80	0	53	30	0	17	52	1.45
155050--155190	66	2.2	66	83	8	177	31	1	17	50	1.54
155280--155320	20	2.0	20	100	0	82	41	24	19	14	1.89
155633--155668	18	2.0	18	88	0	54	22	2	19	55	1.56
157942--157993	24	2.2	24	82	0	59	36	21	19	23	1.95
158882--158952	19	3.7	19	88	1	97	25	11	23	39	1.88
158882--159011	20	6.6	20	85	0	120	23	14	23	39	1.91
160427--160489	30	2.1	30	88	5	92	39	4	22	33	1.75
164416--164618	32	6.4	32	76	4	151	37	10	17	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164622--164920	153	2.0	153	95	0	535	30	16	20	32	1.94
170276--170473	32	6.2	32	78	4	179	38	12	17	31	1.87
170274--170455	64	2.9	62	82	3	211	40	12	16	31	1.85
170500--170580	37	2.2	37	84	4	110	32	43	7	17	1.77
171845--171898	21	2.5	22	82	5	67	64	11	0	24	1.25
174120--174154	15	2.3	15	95	0	61	48	28	8	14	1.73
174926--174978	18	2.9	18	80	0	70	30	32	16	20	1.95
175861--175939	21	3.7	21	73	15	81	26	26	16	30	1.97
179982--180060	21	3.7	21	75	9	88	26	25	16	31	1.96
180661--180710	25	2.0	25	100	0	100	44	12	12	32	1.78

Tables:   1   2   3