genome.fa.s7298.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007298.1 Hibiscus syriacus cultivar Beakdansim tig00019423_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  730416

Tables:   1   2   3   

This is table  2  of  3  ( 350 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182366--182403	2	19.0	2	94	0	67	47	0	2	50	1.15
182476--182514	21	1.9	20	84	5	51	53	2	7	35	1.43
187966--188133	86	2.0	86	87	2	248	39	27	8	23	1.83
189900--190027	63	2.0	63	93	0	220	28	23	16	31	1.96
190771--190850	35	2.3	35	86	0	115	23	2	25	48	1.63
195484--195578	42	2.3	41	83	1	118	14	23	24	37	1.92
195769--196070	73	4.3	71	77	12	300	39	11	20	28	1.87
196142--196225	37	2.2	38	83	6	100	35	8	26	29	1.86
196151--196225	38	2.0	37	84	7	98	36	8	24	32	1.84
199739--199850	3	35.3	3	68	16	57	56	6	4	33	1.45
199739--199850	10	11.8	9	69	16	57	56	6	4	33	1.45
199739--199826	15	5.5	16	71	20	69	56	7	3	31	1.45
200669--200734	30	2.2	31	78	13	75	30	18	16	34	1.93
202767--202845	40	2.0	40	82	9	99	41	20	10	27	1.84
217038--217091	26	2.1	25	86	6	72	50	0	1	48	1.11
224232--224305	31	2.4	31	93	0	121	16	10	16	56	1.66
225029--225097	31	2.2	31	89	0	102	57	17	8	15	1.62
232335--232368	15	2.2	16	89	5	52	76	5	0	17	0.98
232831--232947	29	4.1	28	69	13	76	56	18	11	12	1.67
234311--234430	25	4.8	25	93	2	213	30	15	20	33	1.94
234311--234434	51	2.5	50	95	1	221	29	16	20	33	1.94
234516--234574	3	19.7	3	83	13	77	64	0	1	33	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234817--234986	90	1.9	89	92	3	288	24	18	29	27	1.98
234817--234950	46	3.0	46	68	10	132	24	19	28	27	1.99
234834--234976	46	3.2	44	72	10	139	25	18	28	27	1.98
234850--234987	43	3.1	44	72	11	129	25	18	27	28	1.98
236053--236104	15	3.5	15	75	15	54	7	11	0	80	0.89
248228--248343	29	4.1	28	67	15	67	56	18	12	12	1.67
249709--249828	25	4.8	25	95	2	222	30	15	20	33	1.94
249709--249832	51	2.5	50	97	1	230	29	16	20	33	1.94
249913--249971	3	19.7	3	83	13	77	64	0	1	33	1.04
252306--252392	29	2.9	29	68	18	79	42	2	18	36	1.63
252306--252418	60	1.9	60	85	7	158	40	3	18	37	1.68
256207--256239	16	2.1	16	94	0	57	33	0	27	39	1.57
264457--264496	16	2.5	16	87	0	62	20	15	32	32	1.93
266235--266262	2	14.0	2	100	0	56	50	0	0	50	1.00
268203--268253	24	2.2	23	89	3	75	43	0	1	54	1.11
268220--268270	24	2.1	24	81	0	57	41	1	1	54	1.22
275190--275215	11	2.4	11	100	0	52	46	7	19	26	1.77
275836--275972	59	2.3	60	81	6	170	36	13	16	33	1.88
282932--283065	60	2.2	61	80	6	157	37	7	23	32	1.82
286897--286973	38	2.0	38	87	0	109	27	19	20	32	1.97
296559--296624	15	4.4	15	80	14	73	31	54	4	9	1.52
296560--296592	12	2.8	12	100	0	66	33	54	0	12	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296572--296609	18	2.1	18	95	0	67	31	57	2	7	1.41
300914--300952	18	2.1	19	85	4	53	33	0	12	53	1.39
301530--301588	30	2.0	29	83	3	73	35	8	22	33	1.84
301819--301885	23	2.9	23	84	0	89	19	22	23	34	1.97
321639--321664	11	2.4	11	100	0	52	84	0	0	15	0.62
324776--324819	3	14.7	3	81	9	54	68	0	2	29	1.02
324771--324818	25	2.0	24	87	4	69	66	0	2	31	1.03
328696--328733	3	12.7	3	83	10	51	65	0	2	31	1.06
331165--331198	2	17.0	2	87	0	50	50	2	0	47	1.16
334521--335380	432	2.0	432	89	0	1326	26	25	17	30	1.97
335359--335726	30	12.3	30	87	1	414	10	31	25	32	1.90
339878--339904	6	4.5	6	100	0	54	29	55	0	14	1.40
341833--341868	13	2.8	13	91	4	56	16	55	11	16	1.68
341910--341980	31	2.3	31	87	2	97	52	0	0	47	1.00
343218--343252	15	2.4	14	86	13	52	48	0	2	48	1.16
343237--343276	21	1.9	21	100	0	80	52	0	2	45	1.14
344024--344073	18	2.6	19	76	17	57	38	4	0	58	1.17
345856--345895	20	2.0	21	90	5	64	25	17	22	35	1.95
347441--347478	19	2.0	20	94	5	69	34	15	5	44	1.69
347963--348022	15	3.9	15	73	16	52	8	28	1	61	1.34
349141--349202	31	2.0	31	96	0	115	12	9	24	53	1.69
349336--349386	21	2.4	21	90	0	84	35	15	21	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354732--354763	14	2.3	14	94	0	55	6	12	21	59	1.55
354992--355023	14	2.3	14	94	0	55	12	12	15	59	1.61
360300--360329	2	15.0	2	100	0	60	50	0	0	50	1.00
360365--360489	63	2.0	64	85	1	171	31	16	21	30	1.96
362775--362818	23	1.9	23	85	0	61	29	0	11	59	1.32
363071--363100	15	2.0	15	93	0	51	53	10	0	36	1.35
364579--364618	18	2.2	19	86	8	57	32	2	2	62	1.22
365520--365558	2	19.5	2	100	0	78	48	0	0	51	1.00
367819--367852	13	2.4	14	90	9	52	32	14	47	5	1.69
370256--370301	23	2.0	24	91	4	76	47	0	15	36	1.45
370257--370311	23	2.4	23	81	6	67	50	1	14	32	1.53
370886--370916	2	15.5	2	100	0	62	51	0	48	0	1.00
372412--372549	72	1.9	70	88	2	204	32	9	4	53	1.53
373311--373357	21	2.2	21	88	3	67	53	2	10	34	1.48
373907--373980	36	2.1	36	92	0	121	28	2	24	44	1.67
374892--374935	23	2.0	22	82	13	54	68	0	11	20	1.20
376665--378093	164	8.5	163	80	7	1202	24	19	25	30	1.98
376633--378093	248	5.8	248	84	3	1667	24	19	25	30	1.98
377664--377691	14	2.0	14	100	0	56	21	14	35	28	1.92
377682--378070	85	4.6	86	79	2	421	24	19	24	30	1.98
384327--384366	21	1.9	21	89	0	62	10	25	40	25	1.86
388023--388061	20	2.0	20	84	0	51	23	17	12	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393100--393143	23	2.0	22	82	13	54	68	0	11	20	1.20
395237--395340	37	2.8	38	91	2	165	39	14	18	27	1.89
395560--395896	34	9.5	34	68	21	162	47	4	5	42	1.47
395560--395819	72	3.6	71	75	15	230	47	5	5	41	1.49
395560--395821	36	7.2	35	74	18	173	47	4	5	41	1.49
395581--395867	145	2.0	143	80	10	316	48	4	5	41	1.47
395932--395976	14	3.1	14	87	3	63	22	2	0	75	0.91
396621--396664	20	2.1	21	87	4	63	70	20	6	2	1.21
397405--397476	25	2.8	25	71	10	65	12	16	5	65	1.44
403180--403230	23	2.3	23	86	6	70	70	1	0	27	0.98
415803--415829	2	13.5	2	100	0	54	51	0	0	48	1.00
416390--416419	2	15.5	2	93	6	53	50	0	0	50	1.00
416844--416899	28	2.0	28	100	0	112	39	10	17	32	1.84
421469--421498	14	2.1	14	93	0	51	23	33	26	16	1.96
427975--428010	14	2.6	14	90	0	54	13	2	13	69	1.30
428728--428777	25	1.9	26	84	8	66	26	10	6	58	1.54
435420--435458	20	2.0	19	85	5	51	46	28	10	15	1.78
438470--438548	33	2.4	32	85	6	113	54	2	12	30	1.51
438579--438910	163	2.0	165	92	2	562	40	9	18	31	1.83
457768--457835	21	3.3	21	68	25	56	50	0	1	48	1.10
457959--458002	21	2.0	23	86	8	65	47	0	4	47	1.22
459117--459206	26	3.5	26	73	18	89	52	0	3	44	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459984--460027	23	1.9	23	90	0	70	34	22	13	29	1.93
462557--462581	13	1.9	13	100	0	50	48	0	0	52	1.00
462508--463282	395	2.0	394	90	1	1237	42	10	12	34	1.76
464943--464972	10	2.9	10	95	5	51	53	0	0	46	1.00
464961--465014	21	2.8	20	75	8	58	53	0	1	44	1.11
464990--465018	13	2.1	14	93	6	51	51	0	0	48	1.00
468062--468100	16	2.4	16	91	0	60	41	7	2	48	1.45
476011--476245	32	7.3	32	84	3	303	29	17	18	34	1.94
476008--476245	64	3.7	64	85	2	334	29	16	18	34	1.94
476011--476245	96	2.4	96	86	0	335	29	17	18	34	1.94

Tables:   1   2   3