genome.fa.s731.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000731.1 Hibiscus syriacus cultivar Beakdansim tig00001418_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  166303

Tables:   1   2   

This is table  2  of  2  ( 150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141614--141703	16	5.9	15	67	24	55	50	14	1	34	1.50
141633--141724	46	2.0	46	95	0	166	46	14	0	39	1.44
141711--141900	26	7.6	26	80	13	202	42	8	3	45	1.52
141665--141903	123	1.9	124	90	2	383	43	10	2	43	1.53
141737--141958	97	2.3	98	93	0	374	43	9	3	43	1.52
141766--141919	71	2.2	70	81	11	181	43	11	3	41	1.57
144782--144840	26	2.3	24	76	21	57	38	5	8	47	1.56
145575--145683	47	2.5	44	82	12	134	49	8	0	41	1.39
145652--145705	28	1.9	28	92	0	90	55	12	0	31	1.38
145647--145712	28	2.4	28	82	10	89	54	10	0	34	1.35
146036--146099	32	2.0	32	100	0	128	31	21	25	21	1.98
146199--146378	15	11.1	15	72	17	137	17	53	7	21	1.69
146174--146313	51	2.8	51	94	4	241	18	54	7	19	1.68
146200--146378	82	2.2	83	83	5	229	17	53	7	21	1.69
146265--146391	65	1.9	66	95	3	229	16	50	9	23	1.74
146353--146442	45	2.0	45	100	0	180	15	42	15	26	1.87
146424--146477	18	3.1	18	97	2	101	16	20	24	38	1.92
146499--146566	29	2.3	29	100	0	136	16	38	32	13	1.87
151400--151442	2	21.5	2	100	0	86	51	0	0	48	1.00
161125--161170	23	2.0	23	91	0	74	28	19	17	34	1.94
160895--161393	245	2.0	245	99	0	980	29	19	18	32	1.96
161257--161904	139	4.7	138	86	3	842	25	19	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162802--162897	40	2.4	39	75	6	102	34	22	17	25	1.96
163002--163330	54	6.2	55	77	12	337	42	13	9	34	1.77
163108--163361	108	2.4	108	82	5	282	42	14	9	33	1.77
163150--163361	54	3.9	54	82	7	173	44	13	8	33	1.73
163153--163361	109	1.9	108	84	4	278	44	13	8	33	1.74
164651--164704	28	1.9	28	84	0	72	22	9	35	33	1.86
165455--165486	3	11.0	3	93	6	57	0	31	0	68	0.90
165440--165536	49	2.0	49	82	11	119	6	22	0	71	1.08

Tables:   1   2

The End!