genome.fa.s732.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000732.1 Hibiscus syriacus cultivar Beakdansim tig00001420_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  168431

Tables:   1   2   

This is table  1  of  2  ( 150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6862--6931	35	2.0	35	83	5	88	41	22	0	35	1.54
7448--7521	35	2.1	35	84	0	94	33	0	21	44	1.53
11174--11232	29	2.1	28	84	9	75	45	3	10	40	1.54
11533--11583	18	2.8	19	73	8	52	52	0	7	39	1.30
11804--11833	4	7.8	4	92	7	53	76	0	0	23	0.78
11882--13051	581	2.0	584	91	2	1873	30	17	21	30	1.96
16826--16859	17	2.1	16	89	10	52	67	0	0	32	0.91
18212--18242	5	6.2	5	96	0	53	80	3	0	16	0.83
24166--24216	22	2.3	22	93	0	84	17	33	15	33	1.92
31468--31527	30	2.0	30	93	0	102	26	36	23	13	1.92
31521--31583	19	3.3	19	90	0	99	25	26	28	19	1.98
31521--31600	38	2.0	40	88	4	119	27	25	27	20	1.99
33500--33554	22	2.5	22	79	2	67	41	3	0	54	1.18
41197--41291	3	31.7	3	95	0	163	33	3	0	63	1.10
41290--41324	14	2.4	15	95	4	63	62	0	0	37	0.95
41661--41698	18	2.1	18	85	9	51	68	7	23	0	1.16
50429--50458	10	2.8	11	90	10	53	16	10	0	73	1.09
53968--54019	26	1.9	27	85	14	72	78	0	21	0	0.74
53974--54021	6	7.7	6	78	17	53	79	0	20	0	0.74
53974--54021	13	3.8	12	75	20	53	79	0	20	0	0.74
53969--54020	10	5.0	10	79	9	59	80	0	19	0	0.71
55135--55548	83	5.0	83	96	1	724	28	13	21	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56281--57287	113	8.9	113	92	2	1641	37	13	18	30	1.89
56281--57289	335	3.0	338	92	2	1643	37	12	19	30	1.89
57606--57718	3	37.7	3	96	0	208	33	1	0	64	1.04
57717--57751	14	2.4	15	95	4	63	62	0	0	37	0.95
66360--66406	23	2.0	23	91	0	76	38	8	12	40	1.74
67214--67256	16	2.7	16	92	0	68	62	6	6	23	1.45
67274--67332	31	1.9	31	92	0	100	42	5	8	44	1.57
67357--67399	22	2.0	22	100	0	86	51	13	0	34	1.42
67359--67407	22	2.2	22	88	3	71	55	14	0	30	1.40
67347--68187	54	15.8	54	75	12	561	52	12	0	34	1.39
67362--67995	80	7.9	80	83	12	809	52	12	0	34	1.40
67413--67487	22	3.2	23	79	11	89	54	16	0	29	1.42
67495--67568	22	3.2	22	70	16	60	55	17	0	27	1.42
67561--67614	14	3.6	14	72	18	54	59	5	0	35	1.21
67594--67662	22	3.1	22	91	4	95	55	7	0	37	1.28
67601--68017	22	22.1	20	65	27	120	52	11	0	35	1.39
67347--67995	162	4.0	162	82	13	855	53	12	0	34	1.39
67571--68152	296	2.0	296	97	0	1092	52	12	0	34	1.39
67647--67995	166	2.1	164	93	2	585	52	12	0	34	1.39
67977--68025	22	2.2	22	88	3	71	55	14	0	30	1.40
67347--68187	242	3.5	238	83	8	962	52	12	0	34	1.39
68031--68105	22	3.2	22	75	14	69	54	18	0	26	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68082--68138	18	3.4	18	69	18	59	54	12	0	33	1.38
68100--68279	15	11.5	15	79	12	175	50	3	0	45	1.22
69351--69406	11	4.7	11	72	23	51	44	0	8	46	1.34
69432--69552	28	4.5	26	90	4	179	47	1	6	43	1.39
69322--69467	37	4.0	37	87	7	217	44	0	8	46	1.38
69432--69596	28	6.4	26	79	12	162	47	1	6	44	1.37
69523--69621	47	2.1	47	90	7	157	46	1	6	46	1.34
69495--69656	36	4.4	36	74	13	143	45	1	6	47	1.35
69599--69642	21	2.0	22	86	13	63	43	0	4	52	1.22
69599--69649	24	2.0	26	85	7	70	41	0	5	52	1.25
69641--69681	17	2.3	18	87	4	57	34	0	4	60	1.18
69632--69692	22	2.7	24	85	12	76	34	0	3	62	1.12
69688--69715	9	3.1	9	100	0	56	10	10	0	78	0.96
70916--70948	17	2.0	17	94	5	59	30	3	6	60	1.36
70987--71019	12	2.8	12	95	4	59	21	0	0	78	0.75
70982--71020	12	2.8	15	77	22	57	23	0	0	76	0.78
72619--72839	64	3.5	64	80	6	216	33	19	18	28	1.95
73589--73910	103	3.1	103	95	1	583	26	12	23	37	1.90
73927--73989	23	2.7	23	92	0	99	19	28	26	25	1.98
74671--75159	242	2.0	242	99	0	960	33	10	20	36	1.86
77851--78071	64	3.5	64	83	4	259	33	19	19	27	1.96
78819--79140	103	3.1	103	98	0	626	25	12	24	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79160--79219	23	2.6	23	94	0	102	18	30	25	26	1.98
81242--81314	24	3.0	24	89	0	110	47	12	9	30	1.73
85581--85618	20	1.9	20	88	0	58	13	26	34	26	1.93
89400--89439	21	1.9	21	85	10	55	35	10	2	52	1.48
91672--91705	17	1.9	18	88	5	52	20	5	0	73	1.04
101447--101545	51	2.0	49	90	4	153	24	19	8	48	1.75
102049--102202	83	1.9	83	86	2	220	38	24	10	26	1.88
102757--102979	39	6.1	37	82	11	253	43	1	7	47	1.39
102783--102876	11	8.1	11	68	21	50	41	0	7	51	1.30
102716--102841	26	4.4	30	79	11	104	46	1	5	46	1.35
102711--102843	28	4.6	28	76	18	103	45	1	5	48	1.34
102769--102841	32	2.3	31	86	9	103	43	0	5	50	1.25
102804--102856	26	2.0	28	81	7	65	39	0	3	56	1.17
102981--103023	22	2.0	22	85	0	59	37	2	2	58	1.24
102983--103051	7	9.1	7	77	14	57	33	1	2	62	1.19
104265--104297	17	2.0	17	94	5	59	30	3	6	60	1.36
104331--104372	11	3.6	12	81	12	52	19	0	2	78	0.86
104333--104371	13	3.2	12	86	10	53	15	0	2	82	0.79
104331--104369	18	2.2	18	86	4	53	17	0	2	79	0.84
104391--104425	18	1.9	18	88	11	54	20	11	11	57	1.64
105019--105200	75	2.4	75	82	1	231	42	9	12	35	1.74
105188--105246	23	2.6	23	76	10	66	32	16	13	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105101--105321	121	1.8	121	82	1	282	37	13	14	35	1.84
105235--105396	75	2.2	75	90	0	261	38	9	16	35	1.81
105038--105442	196	2.1	196	86	3	575	38	12	14	35	1.84
105371--105465	23	4.1	23	93	0	145	34	15	14	34	1.89
105494--105684	103	1.9	103	94	0	337	41	10	12	36	1.77
105700--105735	17	2.1	17	94	0	63	50	11	2	36	1.53
106006--106210	108	1.9	108	88	2	313	36	12	11	40	1.78
106115--106528	226	1.8	226	85	3	582	33	13	11	41	1.80
106925--107023	21	4.8	20	75	6	81	37	23	18	21	1.94
106990--107182	20	9.6	20	83	4	228	35	25	20	18	1.95
107680--107737	21	2.8	20	84	5	80	43	17	27	12	1.84
107721--107777	14	3.7	14	75	20	60	43	22	24	8	1.81
107713--107793	33	2.5	33	95	0	144	46	22	22	8	1.78
107789--107886	19	5.7	19	70	22	90	10	23	22	43	1.83
107811--107900	14	5.7	14	72	23	72	8	24	23	43	1.82
107794--107908	33	3.5	33	97	0	221	9	23	20	46	1.80
110213--110248	14	2.6	14	95	0	63	33	0	22	44	1.53
110351--110448	19	5.4	19	84	13	143	45	17	22	14	1.84
110351--110467	53	2.2	53	98	1	227	44	17	23	13	1.85
110457--110678	19	12.7	19	77	18	250	15	20	18	45	1.85
110463--110650	52	3.6	52	95	0	331	14	21	17	46	1.83
110481--110692	33	6.2	33	76	14	207	14	20	18	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112999--113023	12	2.1	12	100	0	50	0	28	0	72	0.86
113198--113244	24	2.0	24	87	8	69	38	21	14	25	1.92
113956--114200	20	12.2	20	87	1	249	20	18	24	36	1.95
114187--114269	21	4.0	21	71	6	69	25	18	24	32	1.97
114997--115071	21	3.6	21	98	0	141	38	0	21	40	1.53
114988--115072	42	2.0	41	88	4	134	41	0	20	38	1.52
115892--115981	20	4.4	20	81	2	117	15	22	22	40	1.91
115864--115981	61	1.9	61	94	0	209	17	21	22	38	1.93
115909--116029	41	3.0	40	86	8	149	20	21	20	37	1.95
116012--116068	22	2.6	22	88	0	96	19	15	28	36	1.92

Tables:   1   2