genome.fa.s732.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000732.1 Hibiscus syriacus cultivar Beakdansim tig00001420_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  168431

Tables:   1   2   

This is table  2  of  2  ( 150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116187--116233	20	2.4	18	80	16	58	40	21	23	14	1.90
116199--116277	20	3.9	20	76	3	86	36	24	24	15	1.93
116205--116282	41	1.9	41	97	0	147	33	25	21	19	1.97
116281--116327	19	2.5	19	96	0	85	42	19	19	19	1.89
116161--116376	94	2.3	93	90	4	328	36	23	20	19	1.95
116315--116393	41	1.9	41	82	7	97	40	26	16	16	1.89
116337--116400	21	3.1	21	75	2	67	37	28	17	17	1.92
117738--117810	32	2.3	31	83	2	92	46	10	2	39	1.53
119546--119587	14	3.0	14	78	21	52	16	0	26	57	1.40
120152--120265	40	2.8	40	90	2	167	7	0	41	50	1.38
128567--128627	23	2.7	23	89	0	95	24	26	27	21	1.99
128842--128898	29	2.0	29	85	0	78	33	22	8	35	1.85
129457--129595	43	3.2	42	82	4	161	26	18	24	30	1.98
129996--130044	21	2.3	21	92	0	80	2	34	20	42	1.64
139680--139770	41	2.2	42	78	11	98	25	25	17	31	1.97
140395--140698	154	2.0	154	98	1	585	43	13	9	33	1.76
143393--143442	20	2.5	20	93	0	91	36	24	14	26	1.93
146756--146795	2	20.0	2	100	0	80	50	0	0	50	1.00
146917--146975	23	2.6	23	78	10	75	28	28	23	18	1.98
149723--149771	24	2.0	24	96	0	89	12	26	14	46	1.79
152138--152179	21	2.0	21	90	0	66	21	23	7	47	1.75
152346--152506	80	2.0	80	98	0	313	28	22	13	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154824--154858	16	2.2	16	89	0	52	71	0	0	28	0.86
156052--156429	190	2.0	191	97	0	722	50	5	7	35	1.55
156718--156936	109	2.0	109	100	0	438	24	18	27	30	1.98
164775--164862	30	3.0	28	80	8	86	20	36	29	13	1.91
165073--165156	29	2.9	28	82	3	96	13	29	39	17	1.88
165440--165482	23	1.9	23	90	4	70	39	2	0	58	1.11
165711--165752	20	2.1	20	91	8	68	54	14	2	28	1.52
167181--167240	30	2.0	31	83	9	79	45	10	28	16	1.80

Tables:   1   2

The End!