Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007320.1 Hibiscus syriacus cultivar Beakdansim tig00019536_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  245168

Tables:   1   2   

This is table  2  of  2  ( 159 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
163094--163133
12
3.3
12
85
0
53
20
32
7
40
1.80
163944--163969
2
13.0
2
100
0
52
50
0
0
50
1.00
164594--166352
200
8.8
200
96
0
3153
30
18
14
36
1.91
166576--166620
19
2.4
18
82
7
54
53
11
2
33
1.49
166588--166636
19
2.6
19
93
0
80
55
8
2
34
1.41
168338--168403
33
2.0
33
90
0
105
22
48
0
28
1.51
168437--168501
21
3.1
21
93
0
103
16
30
10
41
1.83
170730--170776
20
2.4
19
82
10
67
19
17
10
53
1.72
170697--171169
181
2.6
182
90
0
714
26
17
13
41
1.87
172026--172063
8
4.6
9
90
9
55
44
0
0
55
0.99
172032--172130
2
53.0
2
67
13
59
49
0
0
50
1.00
172052--172129
35
2.3
37
80
17
105
50
0
0
50
1.00
172031--172128
13
6.9
15
68
17
57
48
0
0
51
1.00
178454--178498
21
2.1
21
87
0
63
53
0
2
44
1.13
186677--186725
24
2.1
24
88
7
75
34
6
6
53
1.51
196616--196846
113
2.0
113
100
0
462
23
24
16
35
1.94
201074--201119
22
2.1
22
84
8
58
39
8
13
39
1.75
203628--203671
18
2.4
18
88
0
70
52
2
45
0
1.13
203634--203671
6
6.3
6
96
0
67
52
0
47
0
1.00
214523--214607
21
4.2
20
83
5
100
57
8
7
27
1.53
215131--215324
29
6.6
30
80
6
128
33
3
14
47
1.62
215131--215324
59
3.3
58
80
8
180
33
3
14
47
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
215195--215324
58
2.2
59
87
4
183
36
3
13
46
1.61
215195--215324
29
4.4
29
84
4
156
36
3
13
46
1.61
215243--215354
29
3.9
29
79
16
110
38
3
13
44
1.61
221950--222034
21
4.2
20
86
5
109
57
9
7
25
1.55
221950--222034
41
2.1
41
84
8
111
57
9
7
25
1.55
222564--222809
29
8.4
29
84
7
248
32
4
15
48
1.64
222564--222809
59
4.2
58
82
8
241
32
4
15
48
1.64
222623--222809
86
2.1
87
89
3
279
33
4
15
46
1.65
222738--222821
30
2.8
30
83
1
80
39
1
14
45
1.52
222648--222828
29
6.3
29
83
8
162
35
3
16
45
1.63
222649--222828
86
2.1
85
85
6
247
35
3
15
45
1.63
227448--227511
27
2.4
28
82
10
80
54
1
0
43
1.09
227451--227511
26
2.3
26
86
8
79
55
1
0
42
1.09
231338--231724
181
2.1
182
90
2
616
41
3
8
45
1.52
231730--231763
9
3.7
9
96
4
59
23
8
17
50
1.74
235378--236046
217
3.0
217
97
2
1221
31
25
20
22
1.98
235891--235924
3
11.3
3
100
0
68
32
35
32
0
1.58

Tables:   1   2

The End!