genome.fa.s7320.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007320.1 Hibiscus syriacus cultivar Beakdansim tig00019536_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  245168

Tables:   1   2   

This is table  1  of  2  ( 159 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1506--1572	27	2.5	27	85	4	82	32	40	8	17	1.81
8876--8929	25	2.2	25	83	6	65	55	0	3	40	1.17
8970--9016	19	2.5	19	75	6	51	63	2	0	34	1.06
10829--10933	31	3.4	30	88	2	147	37	15	18	29	1.91
11665--11722	21	2.8	21	86	0	71	18	13	31	36	1.90
11687--11731	21	2.1	21	95	0	81	15	15	37	31	1.89
12854--12902	24	2.1	24	85	11	66	28	2	8	61	1.36
22896--22944	2	24.0	2	91	4	80	48	2	2	46	1.25
26475--26539	34	1.9	33	93	3	112	24	3	4	67	1.24
26727--26813	44	2.0	44	81	0	102	29	20	9	40	1.84
27911--27949	17	2.3	17	90	0	60	58	2	0	38	1.12
30037--30084	17	2.8	17	83	0	51	8	16	29	45	1.76
31195--31780	236	2.5	238	81	5	634	29	19	16	35	1.93
31195--31776	156	3.7	159	78	8	568	29	19	16	35	1.93
32627--32851	64	3.5	63	80	7	188	32	20	20	28	1.97
33160--33206	12	3.9	12	88	0	67	34	2	25	38	1.68
33161--33206	24	1.9	24	90	0	74	32	2	26	39	1.68
33218--33284	29	2.3	29	100	0	134	46	16	20	16	1.84
33380--33426	15	3.1	15	100	0	94	14	19	31	34	1.92
39622--39846	64	3.5	64	81	7	217	32	19	20	28	1.97
40155--40201	12	3.9	12	88	0	67	34	2	25	38	1.68
40156--40201	24	1.9	24	90	0	74	32	2	26	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40346--40392	15	3.1	15	100	0	94	14	19	31	34	1.92
41689--41734	24	1.9	24	86	0	65	41	0	10	47	1.38
46691--46729	15	2.6	16	84	8	55	61	2	5	30	1.31
48873--48913	3	13.7	3	100	0	82	65	0	0	34	0.93
50664--50729	31	2.1	31	83	5	80	45	13	13	27	1.81
53580--53712	51	2.6	51	88	3	180	50	15	8	26	1.71
53673--53753	41	2.0	41	95	0	144	56	17	3	22	1.56
53882--53925	22	2.2	19	84	15	54	54	0	0	45	0.99
53896--53933	18	2.1	19	85	5	51	55	0	5	39	1.23
55497--55563	31	2.1	31	88	2	98	44	10	16	28	1.80
55507--55575	31	2.2	31	94	0	120	37	11	20	30	1.88
59073--59111	9	4.1	9	81	12	51	51	0	0	48	1.00
59080--59105	11	2.4	11	100	0	52	46	0	0	53	1.00
59073--59117	20	2.2	20	88	0	63	48	2	0	48	1.13
65712--65752	5	8.0	5	84	15	57	56	2	0	41	1.13
76528--76637	60	1.9	58	92	7	188	41	6	15	36	1.73
79765--79871	24	4.5	24	74	0	97	47	15	14	21	1.82
79765--79873	48	2.3	48	77	0	119	47	15	15	21	1.82
81003--81038	18	2.0	18	88	0	54	30	16	0	52	1.44
82334--82372	7	5.3	7	88	11	60	25	25	35	12	1.92
82333--82372	15	2.7	15	100	0	80	25	25	37	12	1.91
82314--82388	8	9.5	8	79	19	79	22	24	37	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82362--82437	13	5.5	13	77	14	71	17	21	44	17	1.86
82356--82410	18	2.9	18	89	8	74	14	21	45	18	1.85
82362--82423	31	2.0	31	93	0	106	14	20	46	17	1.83
82446--82480	9	3.9	9	100	0	70	31	34	22	11	1.90
84486--84593	48	2.3	48	77	1	119	47	15	15	21	1.83
85719--85754	18	2.0	18	88	0	54	30	16	0	52	1.44
87051--87089	7	5.3	7	88	11	60	25	25	35	12	1.92
87050--87089	15	2.7	15	100	0	80	25	25	37	12	1.91
87031--87105	8	9.5	8	79	19	79	22	24	37	16	1.93
87079--87154	13	5.5	13	77	14	71	17	21	44	17	1.86
87073--87127	18	2.9	18	89	8	74	14	21	45	18	1.85
87079--87140	31	2.0	31	93	0	106	14	20	46	17	1.83
89215--89321	24	4.5	24	74	0	97	47	15	14	21	1.82
89215--89323	48	2.3	48	77	0	119	47	15	15	21	1.82
90453--90488	18	2.0	18	88	0	54	30	16	0	52	1.44
91783--91821	7	5.3	7	88	11	60	25	25	35	12	1.92
91782--91821	15	2.7	15	100	0	80	25	25	37	12	1.91
91763--91837	8	9.5	8	79	19	79	22	24	37	16	1.93
91811--91886	13	5.5	13	77	14	71	17	21	44	17	1.86
91805--91859	18	2.9	18	89	8	74	14	21	45	18	1.85
91811--91872	31	2.0	31	93	0	106	14	20	46	17	1.83
93944--94046	24	4.3	24	74	0	89	47	15	15	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95180--95215	18	2.0	18	88	0	54	30	16	0	52	1.44
96512--96550	7	5.3	7	88	11	60	25	25	35	12	1.92
96511--96550	15	2.7	15	100	0	80	25	25	37	12	1.91
96492--96566	8	9.5	8	79	19	79	22	24	37	16	1.93
96540--96615	13	5.5	13	77	14	71	17	21	44	17	1.86
96534--96588	18	2.9	18	89	8	74	14	21	45	18	1.85
96540--96601	31	2.0	31	93	0	106	14	20	46	17	1.83
99877--99996	43	2.8	42	83	3	141	25	10	5	58	1.54
100055--100140	42	2.0	42	82	4	102	29	23	6	40	1.80
100003--100363	43	8.7	42	70	17	145	27	18	6	47	1.71
100150--100360	43	4.9	42	79	7	187	27	17	4	51	1.65
100150--100347	86	2.3	84	87	3	272	26	17	5	51	1.66
100150--100360	84	2.5	84	86	5	273	27	17	4	51	1.65
101540--101701	20	7.9	20	73	9	94	27	24	18	29	1.98
101555--101613	21	2.7	22	76	5	75	22	25	20	32	1.98
101622--101701	40	2.0	40	85	4	108	30	25	17	27	1.97
101639--101711	20	3.7	20	92	3	96	31	28	16	23	1.96
102529--102575	24	2.0	24	95	0	85	21	21	21	36	1.96
104831--104865	18	1.9	18	94	0	61	54	25	0	20	1.45
104925--105194	140	1.9	140	97	0	513	29	12	14	42	1.83
105165--105381	20	10.9	20	90	0	335	30	21	20	28	1.98
105581--105637	14	4.1	13	80	12	60	43	15	0	40	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107631--107697	20	3.5	18	84	11	80	37	26	17	17	1.93
107642--107697	20	2.8	20	91	0	85	37	25	17	19	1.94
107908--107953	18	2.6	18	96	0	83	43	2	21	32	1.65
109683--109789	20	5.4	20	85	3	119	45	23	16	14	1.84
110393--110510	20	5.9	20	86	4	148	24	21	22	31	1.98
111034--111123	46	2.0	46	88	4	137	50	6	4	38	1.49
119343--119454	60	1.9	59	83	5	145	36	16	9	37	1.81
120320--120367	21	2.3	21	88	0	69	60	6	10	22	1.52
126606--127001	197	2.0	197	91	0	648	29	18	18	33	1.95
128282--128351	20	3.7	18	69	16	52	40	4	0	55	1.19
141591--141642	21	2.4	21	87	3	68	44	0	0	55	0.99
141609--141650	19	2.2	19	87	8	59	40	0	0	59	0.97
148320--148839	261	2.0	258	97	1	981	25	12	16	45	1.83
151310--151347	2	19.0	2	100	0	76	50	0	0	50	1.00
151586--151645	4	14.5	4	77	16	52	20	3	3	73	1.12
151632--151679	17	2.8	17	78	15	53	25	0	4	70	1.04
152939--152986	23	2.1	22	92	3	78	56	0	2	41	1.11
152939--152986	22	2.1	23	92	3	80	56	0	2	41	1.11
152945--152994	23	2.2	23	82	7	57	56	2	2	40	1.22
153851--153913	29	2.2	29	83	11	76	33	6	3	57	1.40
155809--155835	13	2.1	13	100	0	54	29	7	0	62	1.22
156464--156626	87	1.9	87	93	0	281	41	11	14	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156739--157256	260	2.0	246	91	5	831	30	17	15	37	1.90
160085--160323	120	2.0	120	89	0	361	38	14	12	33	1.84
159918--160510	303	2.0	303	94	0	1042	34	15	14	35	1.87
160201--160693	183	2.7	183	95	0	851	33	16	14	35	1.89
160384--161597	303	4.0	303	97	0	2286	35	16	14	34	1.89
160567--160809	120	2.0	120	95	0	432	38	16	13	32	1.87
159916--160996	486	2.2	486	96	0	1982	34	16	14	34	1.89
160384--161597	605	2.0	606	97	0	2286	35	16	14	34	1.89
161172--161418	120	2.1	120	94	0	431	38	15	13	32	1.87
161292--161880	183	3.2	183	94	1	1020	33	16	14	34	1.89

Tables:   1   2