genome.fa.s7338.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007338.1 Hibiscus syriacus cultivar Beakdansim tig00019664_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  236009

Tables:   1   2   

This is table  2  of  2  ( 155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155885--156013	19	7.3	19	75	17	125	45	28	17	8	1.77
155921--156013	33	2.8	32	91	4	150	46	27	18	7	1.76
155885--156013	52	2.5	52	74	14	140	45	28	17	8	1.77
156009--156143	19	7.6	19	76	16	137	10	19	24	45	1.81
156031--156087	14	3.7	14	77	20	60	8	21	24	45	1.80
156014--156106	33	2.8	33	98	0	177	9	20	22	47	1.79
157956--158026	37	1.9	37	97	0	133	29	1	16	52	1.53
158008--158043	14	2.6	14	95	0	63	33	0	22	44	1.53
158150--158270	19	6.6	19	87	11	189	44	17	23	14	1.86
158150--158270	33	3.3	36	85	12	167	44	17	23	14	1.86
158299--158623	19	18.4	19	80	15	396	14	20	17	47	1.83
158299--158623	71	4.6	71	82	13	376	14	20	17	47	1.83
158318--158623	33	8.8	33	79	13	271	14	20	17	47	1.83
158277--158595	52	6.0	52	93	4	541	14	21	16	46	1.83
160923--160947	12	2.1	12	100	0	50	0	28	0	72	0.86
161122--161168	24	2.0	24	87	8	69	38	21	14	25	1.92
161839--162207	20	18.5	20	86	4	458	20	18	26	34	1.96
177620--177860	120	2.0	119	94	0	419	36	20	15	27	1.93
178620--178689	24	2.9	24	80	0	86	54	15	12	17	1.71
178624--178693	12	5.8	12	73	6	61	52	17	14	15	1.74
179861--179898	18	2.1	18	90	0	58	23	15	5	55	1.61
188889--188942	11	4.9	11	77	22	60	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199413--199452	21	1.9	21	89	0	62	55	5	7	32	1.50
199408--199463	21	2.7	20	78	10	58	55	3	5	35	1.40
202998--203091	32	2.9	32	76	9	84	22	11	28	37	1.89
203833--203890	16	3.7	16	81	2	73	17	15	20	46	1.84
203834--203905	32	2.3	32	83	7	94	15	13	22	48	1.80
205978--206010	16	2.0	17	94	5	59	33	6	24	36	1.80
206759--206791	15	2.1	16	88	5	50	51	15	24	9	1.72
214183--214212	2	15.5	2	93	6	53	50	0	0	50	1.00
215019--215108	44	2.0	44	97	0	171	33	11	21	34	1.88
217835--217873	20	2.0	20	90	5	62	20	10	5	64	1.44
218304--218340	14	2.6	15	83	12	51	43	0	2	54	1.14
219213--219251	21	1.9	20	89	5	60	71	2	0	25	0.98
229142--229189	21	2.3	20	80	16	53	22	0	14	62	1.32

Tables:   1   2

The End!