genome.fa.s737.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000737.1 Hibiscus syriacus cultivar Beakdansim tig00001427_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  278038

Tables:   1   2   

This is table  2  of  2  ( 169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164634--164708	19	3.9	19	94	0	123	28	33	26	12	1.92
164638--164718	19	4.3	19	92	1	110	28	32	25	13	1.94
164638--164719	28	2.9	28	83	7	103	28	31	25	14	1.95
164632--164718	9	9.3	9	82	7	102	27	31	27	13	1.94
166436--166494	18	3.4	18	73	21	72	23	28	32	15	1.95
169543--169747	31	6.6	31	94	0	356	38	22	19	20	1.93
170699--170768	19	3.9	19	68	24	62	21	32	28	17	1.96
172974--173019	2	23.0	2	100	0	92	50	0	0	50	1.00
181382--181491	23	5.0	21	75	16	91	31	27	19	21	1.97
182034--182085	19	2.5	20	84	9	61	23	28	19	28	1.98
182118--182210	20	4.5	21	75	16	88	25	33	10	30	1.90
182118--182231	20	5.5	22	72	21	84	26	32	11	29	1.91
182118--182237	42	2.9	41	87	4	154	25	33	10	30	1.90
185049--185083	2	17.5	2	100	0	70	51	0	0	48	1.00
191780--191830	24	2.1	24	85	3	66	56	0	5	37	1.23
192652--192710	29	2.0	29	100	0	118	23	13	13	49	1.78
197327--197385	29	2.0	29	100	0	118	23	13	13	49	1.78
198699--198755	28	2.0	28	100	0	114	42	7	10	40	1.66
200456--200488	2	16.5	2	100	0	66	51	0	0	48	1.00
206686--206729	23	1.9	23	81	9	54	47	2	4	45	1.35
209324--209382	2	29.5	2	100	0	118	50	0	0	49	1.00
213941--213980	2	20.5	2	94	5	73	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229266--229323	26	2.2	26	82	11	66	51	5	3	39	1.41
229885--229996	24	4.7	24	73	8	59	44	17	9	27	1.80
233153--233204	18	2.9	18	97	0	95	17	46	21	15	1.84
233217--233287	29	2.4	29	83	0	79	23	8	21	46	1.78
236269--236305	17	2.1	17	90	5	56	62	0	2	35	1.10
241087--241130	19	2.3	19	92	0	70	63	9	27	0	1.24
241485--241565	28	2.9	28	78	10	85	38	7	16	38	1.76
246606--246771	60	2.8	59	76	10	158	40	6	17	35	1.74
247136--247202	14	4.8	14	78	5	64	22	0	26	50	1.49
247130--247202	21	3.5	21	75	7	76	21	0	27	50	1.49
247165--247212	14	3.5	14	81	10	55	22	0	29	47	1.51
249079--249148	25	2.9	24	85	4	97	17	25	27	30	1.97
249091--249167	25	3.2	23	80	8	91	15	23	24	36	1.94
249082--249191	47	2.3	47	81	7	107	18	22	25	33	1.96
252857--252923	28	2.4	28	94	0	116	40	5	13	40	1.69
253807--253846	21	1.9	21	94	0	71	35	7	2	55	1.42
258143--258170	2	14.0	2	100	0	56	50	0	0	50	1.00
264550--265228	165	4.1	165	90	2	934	23	20	25	29	1.99
264550--265240	84	8.3	84	78	6	746	23	20	25	29	1.99
269108--269149	21	2.0	21	82	13	52	69	0	4	26	1.08
270525--271184	81	8.0	82	78	5	688	24	21	24	29	1.99
270515--271184	165	4.0	165	90	1	923	23	21	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270504--271187	84	8.3	82	78	5	714	23	21	25	29	1.99
274957--274995	6	6.8	6	88	11	64	48	0	0	51	1.00
276161--276215	23	2.5	22	81	18	69	70	0	1	27	0.97
276889--277081	76	2.6	75	89	6	300	49	11	14	24	1.76
276889--277083	38	5.2	37	86	7	268	49	11	14	25	1.76

Tables:   1   2

The End!