genome.fa.s7373.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007373.1 Hibiscus syriacus cultivar Beakdansim tig00019789_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  561090

Tables:   1   2   

This is table  2  of  2  ( 239 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214442--214489	10	5.6	9	85	14	50	18	35	22	22	1.96
215715--215755	18	2.3	18	86	0	55	53	2	17	26	1.56
216682--216780	47	2.1	47	100	0	198	25	17	14	43	1.86
216903--217017	24	4.8	24	88	6	162	22	17	19	40	1.91
216954--217027	24	3.1	24	86	3	78	21	16	18	43	1.88
220725--220786	30	2.1	30	100	0	124	35	6	29	29	1.82
224797--224844	14	3.6	14	73	23	50	54	4	2	39	1.32
224807--224871	10	6.3	10	73	25	55	56	1	1	40	1.18
224797--224849	24	2.2	24	90	3	81	56	3	1	37	1.28
224977--225019	7	6.3	7	81	5	52	46	34	0	18	1.50
224982--225021	20	2.0	21	90	5	64	45	32	0	22	1.53
226440--226473	17	1.9	18	94	5	61	79	0	0	20	0.73
226440--226473	9	3.9	9	92	7	61	79	0	0	20	0.73
226569--226621	27	2.0	27	96	0	97	50	13	7	28	1.68
226837--226879	18	2.3	18	88	8	59	53	20	0	25	1.46
227977--228395	55	7.6	55	82	5	429	30	23	16	29	1.96
227986--228351	111	3.3	111	87	3	492	31	22	16	29	1.96
229701--229849	14	10.9	13	71	18	99	8	15	1	74	1.12
229700--229842	20	7.1	19	68	18	60	8	15	1	74	1.11
229690--229849	40	3.7	39	71	24	110	8	15	1	75	1.11
229731--229868	55	2.4	59	76	11	135	9	13	1	75	1.11
229685--229868	9	21.3	9	71	22	89	9	13	1	75	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229701--229813	7	16.7	7	72	20	80	9	14	1	74	1.15
241067--241094	10	2.8	10	100	0	56	78	0	0	21	0.75
241190--241243	27	2.0	27	92	7	92	50	16	7	25	1.71
241460--241502	18	2.3	18	88	8	59	53	20	0	25	1.46
246792--246845	3	18.0	3	84	7	65	38	1	0	59	1.08
246796--246846	25	2.0	26	92	3	86	41	1	0	56	1.10
248241--248308	25	2.7	23	73	24	57	27	1	4	66	1.20
248210--248287	36	2.2	35	82	15	90	26	3	3	65	1.27
248443--248693	138	1.8	138	87	1	378	38	6	9	45	1.63
248443--248732	138	2.1	136	84	7	354	40	6	7	45	1.58
255878--255930	23	2.3	22	81	18	63	28	0	5	66	1.15
258267--258310	20	2.2	20	100	0	88	18	27	29	25	1.98
262436--262681	45	5.4	45	91	1	341	36	11	22	29	1.89
269008--269037	15	2.0	15	93	0	51	43	3	20	33	1.68
269609--269865	45	5.7	45	84	1	282	38	9	23	28	1.87
270693--270768	31	2.4	31	80	2	89	27	31	26	14	1.95
270645--270768	63	2.0	63	82	9	155	26	29	27	16	1.97
271648--271704	17	3.4	17	90	4	89	17	21	43	17	1.88
271656--271705	17	2.9	17	96	0	91	14	24	44	18	1.86
271699--271765	9	7.1	9	75	9	62	28	31	23	16	1.96
271699--271767	19	3.7	18	86	3	75	27	30	23	18	1.98
280005--280074	3	23.0	3	97	2	131	65	1	0	32	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281467--281531	20	3.2	20	84	0	85	23	20	20	36	1.95
290821--290866	24	1.9	24	82	8	58	6	17	8	67	1.39
295101--295318	95	2.3	94	77	8	210	34	15	22	27	1.94
295267--295318	22	2.5	22	84	6	72	30	15	25	28	1.96
295642--296111	59	8.0	59	90	0	674	33	11	18	35	1.87
302324--302359	19	1.9	18	94	5	63	33	16	25	25	1.96
302397--302450	22	2.6	20	82	5	63	31	16	24	27	1.96
302320--302537	94	2.3	96	85	5	293	32	16	24	27	1.96
302880--303025	59	2.5	59	87	0	211	36	7	15	39	1.76
309191--309276	19	4.7	18	78	12	77	74	1	4	19	1.06
309195--309276	5	15.8	5	70	18	53	74	1	4	19	1.07
309191--309276	6	14.2	6	74	20	56	74	1	4	19	1.06
309470--310184	235	3.1	228	81	6	801	34	14	14	35	1.88
317838--317888	22	2.3	22	93	3	84	35	19	19	25	1.95
347099--347130	15	2.1	15	100	0	64	25	15	25	34	1.95
367482--367546	18	3.6	18	79	8	78	21	20	27	30	1.98
367529--367685	54	2.9	54	84	0	197	36	19	17	26	1.94
367934--368349	81	5.1	81	85	2	507	36	11	20	31	1.88
373043--373079	18	2.1	18	94	0	65	24	24	27	24	2.00
373065--373189	54	2.3	53	79	9	137	31	20	20	28	1.97
373416--374397	81	12.1	81	84	1	1182	36	12	18	32	1.89
378816--379447	93	6.8	92	78	3	516	34	9	17	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382123--382176	22	2.7	19	82	8	63	37	16	16	29	1.91
382863--383339	81	5.9	81	85	2	582	35	12	21	30	1.90
382863--383343	242	2.0	243	86	1	669	35	12	21	30	1.90
382863--383339	162	3.0	161	87	2	645	35	12	21	30	1.90
384308--384355	24	2.0	24	100	0	96	41	12	16	29	1.85
385180--385405	113	2.0	113	100	0	452	31	15	19	33	1.93
387791--388460	81	8.3	81	84	2	803	35	12	21	30	1.90
389290--389328	16	2.4	16	86	4	51	30	15	10	43	1.80
392865--392970	17	6.1	17	68	12	72	39	10	7	42	1.67
396730--396827	39	2.5	39	86	1	135	20	24	25	29	1.99
396812--396923	45	2.5	45	86	0	143	25	27	17	28	1.98
401454--401510	16	3.6	16	95	0	96	26	12	12	49	1.75
403752--403874	17	7.2	17	74	6	88	39	11	10	39	1.76
404526--404688	89	1.8	89	94	0	290	36	9	6	47	1.63
411354--411519	90	1.9	89	93	1	287	34	12	7	45	1.70
412934--412963	12	2.5	12	100	0	60	40	10	23	26	1.86
424875--425527	81	8.1	81	86	1	851	34	11	22	30	1.90
428112--428210	46	2.2	44	85	3	126	35	19	17	28	1.94
428302--428353	20	2.6	20	90	0	86	30	9	32	26	1.89
428940--428974	16	2.2	16	89	0	52	57	25	0	17	1.40
455573--455899	45	7.2	45	88	1	474	23	22	10	43	1.83
455573--455899	91	3.6	90	88	1	456	23	22	10	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455573--455899	136	2.4	136	90	1	505	23	22	10	43	1.83
456323--456522	95	2.1	95	80	7	219	28	23	11	37	1.89
457821--457866	24	1.9	24	86	8	67	73	6	8	10	1.23
464102--464146	23	2.0	23	90	0	72	37	4	24	33	1.76
468734--468794	31	2.0	31	96	0	113	24	22	14	37	1.92
469619--469970	175	2.0	177	98	1	690	40	18	14	26	1.89
474210--474958	81	9.4	81	81	3	804	32	21	11	35	1.89
474228--474958	242	3.1	238	80	6	794	32	20	11	35	1.89
485732--486086	55	6.5	55	80	8	377	29	19	20	30	1.97
485687--486031	107	3.2	109	83	5	396	27	20	21	30	1.98
485732--486105	162	2.3	164	86	5	499	29	19	21	30	1.97
485687--486086	110	3.7	109	83	5	434	28	20	20	30	1.98
485687--486101	55	7.6	55	77	10	352	28	20	20	30	1.98
486088--486123	18	2.0	18	100	0	72	38	16	27	16	1.90
485992--486233	128	1.9	128	86	1	351	31	17	21	28	1.97
486590--486745	75	2.1	74	82	8	192	29	23	15	31	1.95
498556--498778	95	2.3	95	84	8	287	31	16	25	26	1.97
498726--498778	22	2.5	20	80	11	61	33	13	26	26	1.93
499102--499401	108	2.8	108	78	3	325	31	17	18	33	1.94
499102--499401	54	5.6	54	77	4	293	31	17	18	33	1.94
503681--504285	308	2.0	308	99	0	1201	35	13	20	30	1.92
505798--505978	94	1.9	93	82	10	226	32	16	24	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506302--506473	54	3.2	54	81	3	213	26	18	20	34	1.95
509918--509959	21	2.0	21	100	0	84	47	4	19	28	1.69
510983--511021	17	2.2	19	86	9	55	23	33	15	28	1.95
517457--517577	54	2.2	54	82	5	138	31	16	22	29	1.96
521428--522002	288	2.0	288	86	1	803	25	18	14	41	1.89
527509--527550	10	4.2	10	85	8	59	40	21	19	19	1.92
534733--534777	7	6.6	7	84	5	65	24	26	28	20	1.99
553722--553763	22	2.0	21	90	4	66	33	21	11	33	1.90
553726--553770	22	2.0	22	86	0	63	37	17	11	33	1.85

Tables:   1   2

The End!