genome.fa.s7377.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007377.1 Hibiscus syriacus cultivar Beakdansim tig00019812_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121927

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3248--3478	55	4.2	55	87	3	331	36	9	18	35	1.83
5577--5619	2	21.5	2	100	0	86	51	0	0	48	1.00
8824--8988	52	3.1	51	74	16	149	37	11	15	35	1.84
8824--8988	53	3.1	53	78	11	187	37	11	15	35	1.84
10198--10241	20	2.2	20	91	0	70	34	31	22	11	1.90
14740--14777	20	1.9	20	100	0	76	28	15	18	36	1.92
16233--16664	93	4.7	93	77	5	356	35	10	17	36	1.84
22986--23020	3	11.7	3	100	0	70	31	0	0	68	0.90
26266--26383	47	2.6	44	82	6	146	31	20	9	38	1.84
26484--26620	59	2.3	58	79	2	166	29	23	18	29	1.98
32893--32944	25	2.1	25	100	0	104	23	28	19	28	1.98
33650--33770	47	2.7	45	85	8	156	31	22	8	38	1.84
33878--34006	59	2.2	59	85	0	177	30	25	15	28	1.96
40639--40682	19	2.3	21	77	18	51	29	9	18	43	1.80
43365--43564	46	4.4	46	85	1	233	45	8	23	24	1.79
43431--43506	20	3.5	20	70	19	62	40	6	27	25	1.80
43450--43533	26	3.5	26	75	18	99	44	7	23	25	1.79
45802--45890	27	3.6	27	72	20	102	44	12	24	17	1.83
45792--45969	47	3.8	47	87	0	230	44	11	21	22	1.83
45829--45909	20	3.7	20	72	20	72	39	13	28	18	1.89
47903--47932	15	1.9	16	93	6	53	46	3	13	36	1.60
48226--48256	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49654--49759	21	5.1	21	88	4	146	58	8	6	26	1.52
50275--50496	29	7.6	28	85	3	210	29	4	18	47	1.68
50354--50496	58	2.5	58	90	0	232	32	4	19	44	1.70
50273--50496	87	2.6	88	85	0	279	29	4	18	47	1.68
50356--50526	29	6.1	27	87	4	168	32	4	17	45	1.67
57106--57211	21	5.1	21	80	8	112	57	10	5	26	1.54
57728--57957	29	8.0	28	84	8	207	30	3	16	48	1.63
57799--57977	86	2.1	88	85	4	238	34	3	16	45	1.66
57733--57977	115	2.1	116	81	8	284	31	3	15	48	1.63
60546--60651	50	2.3	45	84	14	128	32	1	14	51	1.52
64961--65066	50	2.3	45	84	14	128	32	1	14	51	1.52
67727--67770	22	2.0	22	82	8	54	65	9	2	22	1.32
69078--69146	8	9.1	7	72	24	52	65	0	2	31	1.08
69077--69148	3	24.7	3	76	16	71	63	0	2	33	1.08
69484--69930	122	3.6	122	78	12	472	27	18	14	40	1.89
71071--71118	18	2.6	18	73	3	51	64	2	6	27	1.28
71081--71154	20	3.7	19	77	10	69	56	4	8	31	1.47
75027--75057	9	3.6	9	91	8	55	54	0	22	22	1.44
77594--77637	22	2.0	22	82	8	54	65	9	2	22	1.32
78913--78999	17	4.7	19	76	16	94	63	0	2	34	1.07
78909--79000	20	4.7	19	75	17	91	61	0	2	35	1.08
78913--78999	3	29.7	3	77	13	92	63	0	2	34	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80617--80650	17	1.9	18	88	5	52	35	20	8	35	1.84
80812--80922	59	1.9	59	87	5	163	34	17	11	36	1.86
80786--81013	59	3.9	58	73	10	160	29	21	11	37	1.89
80854--81114	59	4.5	59	73	11	182	29	20	11	37	1.88
80840--81114	118	2.4	118	82	5	335	30	20	11	37	1.87
80743--81120	58	6.5	57	70	13	200	29	21	11	37	1.89
87498--87531	17	1.9	18	88	5	52	35	20	8	35	1.84
87693--87803	58	1.9	59	85	5	154	31	18	12	36	1.89
99137--99184	20	2.4	20	100	0	96	35	35	0	29	1.58
100812--100936	34	3.7	34	76	0	133	47	4	19	29	1.67
106860--106922	31	2.0	31	87	0	90	22	3	34	39	1.70
108611--108654	19	2.2	20	96	4	81	36	18	29	15	1.92
108952--109356	54	7.5	54	80	3	395	37	18	15	28	1.91
110623--110655	15	2.2	15	89	10	50	81	0	3	15	0.80
112128--112171	22	2.1	20	87	8	61	25	20	15	38	1.92
118412--118620	111	1.9	111	86	2	303	36	20	13	29	1.91

Tables:   1

The End!