genome.fa.s7386.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007386.1 Hibiscus syriacus cultivar Beakdansim tig00019862_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  903698

Tables:   1   2   3   

This is table  2  of  3  ( 336 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477535--477650	24	4.8	24	84	6	137	26	16	18	38	1.91
479767--479810	18	2.5	18	88	3	63	18	47	20	13	1.82
481705--481844	24	5.8	24	83	5	124	29	12	17	40	1.87
481731--481774	12	3.7	12	82	11	63	29	11	15	43	1.82
481705--481784	12	6.7	11	74	14	61	30	12	16	41	1.85
495853--495896	21	2.1	21	86	0	61	9	36	15	38	1.80
496482--496561	31	2.6	31	91	0	124	31	2	35	31	1.71
499074--499130	26	2.2	26	93	0	96	29	21	14	35	1.92
499423--499481	27	2.2	27	90	3	93	25	22	6	45	1.76
499432--499486	27	2.0	27	96	0	101	21	25	3	49	1.66
507519--507628	53	2.1	53	85	0	148	40	18	15	26	1.90
522214--522258	21	2.1	21	87	0	63	22	24	17	35	1.95
522248--522313	20	3.3	20	95	0	123	39	19	19	21	1.93
522515--522579	22	3.0	21	84	6	85	26	35	13	24	1.93
522930--522967	20	1.9	20	100	0	76	21	21	26	31	1.98
522929--522999	20	3.5	20	82	3	70	15	16	22	45	1.85
522970--523013	20	2.2	20	84	8	54	15	11	18	54	1.70
526030--526063	17	2.0	17	88	0	50	52	32	0	14	1.42
528024--528063	21	1.9	21	89	0	62	10	25	40	25	1.86
528044--528106	20	2.9	21	79	9	65	15	25	34	23	1.95
531916--531955	21	1.9	21	85	10	55	35	10	2	52	1.48
534400--534451	20	2.6	20	93	0	86	40	25	17	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534443--534545	47	2.2	47	100	0	206	47	20	19	12	1.81
534537--534603	20	3.3	20	89	0	98	38	22	17	20	1.93
534650--534735	20	4.3	20	92	2	111	22	18	23	36	1.95
534648--534745	20	4.9	20	87	2	83	21	18	22	37	1.94
536706--536741	14	2.6	14	90	0	54	30	0	22	47	1.52
536866--536941	33	2.3	34	93	2	127	46	18	22	13	1.83
536952--537018	20	3.7	19	75	20	81	13	22	17	46	1.83
536956--537031	33	2.3	34	93	2	136	14	23	17	44	1.85
536956--537040	33	2.5	33	88	5	118	15	22	16	45	1.84
537025--537111	20	4.3	20	83	2	113	19	20	22	36	1.95
537023--537111	40	2.2	40	88	4	126	20	21	22	35	1.96
539874--539956	20	4.2	20	92	0	130	25	19	25	30	1.98
539943--540095	20	7.7	20	95	0	270	20	19	19	39	1.92
540093--540132	21	1.9	21	94	0	71	42	17	20	20	1.89
544063--544184	59	2.1	59	84	0	154	29	20	17	32	1.95
551830--551906	19	3.8	19	76	20	68	22	18	32	27	1.97
554638--554681	23	1.9	23	85	0	61	34	13	25	27	1.93
554637--554740	21	4.8	21	75	10	84	32	15	24	27	1.95
554617--554729	43	2.6	41	75	20	115	34	15	24	24	1.95
557226--557268	20	2.2	20	86	0	59	58	18	4	18	1.56
568799--568828	13	2.3	13	100	0	60	50	33	6	10	1.62
573363--573439	19	3.8	19	74	17	66	20	16	33	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573382--573439	19	2.8	21	77	17	68	22	15	32	29	1.95
574033--574154	59	2.1	59	85	0	163	30	22	16	31	1.96
580611--580659	22	2.3	21	89	3	71	51	0	22	26	1.49
585075--585124	20	2.5	20	83	3	66	36	10	20	34	1.86
585190--585230	20	2.0	20	90	0	64	31	19	17	31	1.95
588786--588831	21	2.2	21	96	0	83	34	8	26	30	1.86
600537--600581	23	2.0	22	82	4	54	51	17	15	15	1.77
607644--607678	12	2.9	12	91	0	52	54	31	0	14	1.40
607799--607852	24	2.3	23	87	6	81	24	12	20	42	1.87
609259--609302	13	3.4	13	90	0	70	31	20	13	34	1.92
614123--614181	18	3.1	18	81	13	73	20	20	30	28	1.97
614120--614181	22	3.0	21	79	15	76	20	19	29	30	1.97
614750--614795	22	2.1	22	95	0	83	17	21	34	26	1.95
617606--617661	27	2.1	26	96	3	103	37	3	26	32	1.74
618623--618684	22	3.0	22	88	11	96	20	22	29	27	1.99
618628--618684	18	2.9	19	89	10	80	19	22	31	26	1.98
621868--621922	20	2.8	20	82	0	65	49	18	14	18	1.80
622238--622301	31	2.1	31	100	0	128	46	15	6	31	1.71
623774--623848	20	3.8	20	85	0	105	50	21	14	13	1.77
624393--624438	20	2.3	20	92	0	74	19	13	21	45	1.84
625726--625756	10	3.1	10	90	0	53	32	0	6	61	1.21
626163--626192	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642198--642267	20	3.3	21	68	16	63	42	2	5	48	1.41
642240--642402	89	1.8	89	91	1	272	43	7	10	38	1.67
642697--642743	24	2.0	24	100	0	94	42	19	8	29	1.80
643053--643098	24	1.9	24	90	0	74	26	15	34	23	1.94
645739--645818	32	2.5	32	93	0	142	40	8	21	30	1.83
653582--653629	25	2.0	24	91	4	78	37	4	2	56	1.30
653582--653643	25	2.5	25	84	2	72	33	4	3	58	1.36
662587--662711	47	2.8	46	85	7	159	40	8	19	32	1.80
668966--669014	16	3.0	16	90	3	71	12	0	20	67	1.22
669282--669345	12	5.2	12	83	5	74	67	0	1	31	1.00
669289--669348	3	19.3	3	83	13	77	66	0	0	33	0.92
670670--670749	42	1.9	42	86	0	115	33	21	22	22	1.97
669962--670826	256	3.3	257	86	4	1200	33	16	15	34	1.90
681193--681260	21	3.2	21	72	15	68	25	4	0	70	1.05
681201--681266	20	3.1	21	79	14	73	27	4	0	68	1.09
681230--681273	23	1.9	23	85	0	61	29	0	2	68	1.02
681201--681257	24	2.4	24	75	16	64	24	5	0	70	1.08
681329--681358	15	1.9	16	93	6	53	30	0	0	70	0.88
681336--681425	11	7.8	12	68	24	50	26	2	2	68	1.12
681327--681427	38	2.7	36	77	11	105	26	1	1	69	1.10
681327--681378	14	3.9	14	72	10	54	26	1	1	69	1.10
681635--681661	6	4.5	6	100	0	54	14	0	0	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681645--681703	25	2.3	25	80	8	66	11	5	6	76	1.14
684708--684780	27	2.8	25	76	13	74	75	1	19	4	1.04
684831--684968	69	2.0	69	90	2	215	36	21	15	26	1.93
686438--686740	65	4.6	64	81	4	293	32	20	9	37	1.85
686504--686620	36	3.5	35	68	20	113	30	18	11	38	1.87
687469--687831	110	3.3	110	87	3	486	34	22	18	23	1.96
689105--689175	18	4.0	18	76	16	69	36	4	0	59	1.17
689110--689175	19	4.0	17	78	18	59	37	4	0	57	1.19
689205--689264	17	3.2	17	70	20	57	30	5	1	63	1.25
690809--690865	3	18.3	3	75	13	53	63	1	3	31	1.22
691487--691578	38	2.4	39	80	12	100	35	10	9	43	1.73
695121--695159	19	2.0	21	85	14	57	33	0	2	64	1.08
696053--696170	60	2.0	59	83	1	146	27	25	22	24	1.99
698486--698534	24	2.0	24	92	0	80	71	4	0	24	1.03
700821--700863	17	2.5	17	84	0	59	18	4	41	34	1.71
703131--703165	18	1.9	18	88	11	54	31	0	22	45	1.53
711178--711222	18	2.5	18	82	10	56	31	0	26	42	1.56
712344--712838	212	2.3	212	93	0	855	39	9	15	35	1.80
714067--714107	21	2.0	21	90	0	64	19	19	21	39	1.93
716064--716645	291	2.0	288	93	3	1008	41	7	12	38	1.71
721278--721357	29	2.8	29	96	0	142	30	35	26	8	1.87
721582--721615	17	2.0	17	100	0	68	23	47	0	29	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722126--722169	21	2.1	21	91	0	70	29	0	15	54	1.42
722986--723021	13	2.6	15	79	20	51	47	5	5	41	1.50
725967--726056	17	4.8	18	71	18	67	48	0	7	43	1.31
726252--726289	12	3.2	12	96	3	69	50	0	7	42	1.31
726311--726504	26	7.7	26	81	11	199	45	3	7	43	1.48
726252--726509	124	2.1	124	89	3	403	44	2	8	44	1.47
726501--726786	49	5.4	49	81	15	331	40	0	12	46	1.41
726610--726690	24	3.3	24	65	3	72	39	0	14	45	1.45
726501--726788	109	2.7	108	93	2	490	40	0	12	46	1.41
726670--726696	10	2.7	10	100	0	54	40	0	18	40	1.51

Tables:   1   2   3