genome.fa.s739.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000739.1 Hibiscus syriacus cultivar Beakdansim tig00001429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  225954

Tables:   1   2   

This is table  2  of  2  ( 179 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151894--151930	14	2.6	14	86	0	56	48	21	0	29	1.50
151937--151965	3	10.0	3	92	7	51	68	0	0	31	0.89
153070--153222	65	2.4	65	85	3	211	27	15	26	30	1.96
153072--153271	65	3.1	64	81	9	203	27	17	26	30	1.97
153866--153903	8	4.8	8	90	0	58	50	34	2	13	1.55
161187--161339	65	2.4	65	86	3	211	26	15	26	30	1.96
162590--162694	42	2.5	42	78	3	122	24	20	34	20	1.96
163017--163113	33	2.9	33	78	3	113	46	22	17	13	1.83
163087--163173	20	4.3	20	89	2	113	34	20	19	25	1.96
163182--163319	19	7.7	19	72	22	84	17	18	20	44	1.87
163188--163352	33	4.8	33	73	18	138	16	18	20	44	1.87
163877--163917	18	2.3	18	86	0	55	17	12	43	26	1.84
165229--165278	20	2.5	20	93	0	82	50	24	14	12	1.76
165648--165713	22	3.0	22	86	0	96	19	16	39	24	1.92
165916--166043	20	6.3	20	86	1	184	21	19	19	39	1.93
166040--166106	21	3.2	21	93	0	107	35	17	28	17	1.93
166154--166196	19	2.3	19	87	0	59	20	16	27	34	1.94
166172--166209	19	2.0	19	89	0	58	23	18	23	34	1.96
166711--166741	2	15.5	2	100	0	62	48	0	0	51	1.00
167464--167488	2	12.5	2	100	0	50	52	0	0	48	1.00
169117--169142	2	13.0	2	100	0	52	50	0	0	50	1.00
176356--176394	16	2.4	16	86	0	60	69	5	0	25	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176340--176392	24	2.3	23	83	9	63	71	3	0	24	1.02
185671--185708	17	2.3	17	86	4	51	60	7	5	26	1.46
186023--186064	21	2.0	21	85	4	57	66	4	9	19	1.38
186025--186165	30	4.8	29	70	19	87	63	7	8	20	1.48
187223--187263	21	2.0	21	85	0	55	29	2	21	46	1.64
188110--188560	211	2.2	208	79	6	473	30	17	25	27	1.97
188326--188629	126	2.4	128	83	5	384	27	16	27	28	1.97
188639--188687	21	2.3	21	96	0	89	26	8	44	20	1.79
189111--189176	32	2.1	32	88	0	96	30	24	15	30	1.95
190223--190268	14	3.2	15	82	14	53	2	21	4	71	1.14
191285--191354	34	2.1	34	84	5	90	24	28	15	31	1.96
191569--191608	21	1.9	22	90	10	66	17	10	35	37	1.83
191721--191794	20	3.7	20	82	10	96	28	22	28	20	1.99
191712--191794	41	2.0	41	90	4	132	26	25	27	20	1.99
191816--191858	21	2.0	21	86	0	59	25	18	30	25	1.98
191938--191995	30	2.0	29	90	10	91	44	17	5	32	1.70
191938--191997	29	2.0	30	93	6	104	43	16	6	33	1.74
198128--198184	23	2.5	23	88	0	87	21	26	24	28	1.99
201782--201838	22	2.6	22	91	0	96	17	17	29	35	1.93
201912--201955	10	4.4	10	82	0	52	31	38	29	0	1.58
201906--201935	15	1.9	16	93	6	53	30	46	23	0	1.52
201907--201945	20	1.9	21	94	5	71	28	46	25	0	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201938--201968	5	6.4	5	96	3	55	35	22	41	0	1.54
202442--202477	10	3.3	11	92	7	56	0	16	55	27	1.42
202439--202473	5	6.6	5	96	3	52	0	20	54	25	1.45
202848--203065	108	2.0	109	99	0	429	52	11	14	21	1.73
209015--209044	15	2.0	15	100	0	60	40	13	20	26	1.89
209243--209287	23	2.0	23	81	0	54	40	11	17	31	1.85
209296--209805	198	2.6	195	83	5	605	31	12	14	41	1.83
212723--212756	15	2.3	15	100	0	68	5	35	0	58	1.22
212856--212983	66	2.0	65	80	7	143	25	40	1	32	1.65
213846--213885	22	1.9	21	85	10	55	27	20	25	27	1.99
215710--216482	180	4.3	182	85	5	975	27	17	12	42	1.86
216775--216830	3	19.3	3	85	14	82	33	0	0	66	0.92
221521--221670	19	7.6	20	70	8	85	28	12	26	34	1.92
224645--224693	26	2.0	23	88	11	71	16	20	10	53	1.72
225622--225663	19	2.3	18	88	12	59	71	0	19	9	1.13

Tables:   1   2

The End!