genome.fa.s7435.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007435.1 Hibiscus syriacus cultivar Beakdansim tig00020265_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72092

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3306--3358	17	3.1	17	77	0	61	47	5	9	37	1.60
7656--24489	214	78.6	214	90	1	25271	32	18	14	33	1.92
8562--8663	42	2.5	41	80	1	105	29	23	23	23	1.99
8994--9091	42	2.4	41	77	3	115	30	21	23	24	1.99
9639--9735	42	2.3	41	80	3	122	29	21	21	26	1.99
10284--10375	42	2.2	41	82	1	103	30	26	21	21	1.99
10492--10591	42	2.4	41	78	5	112	29	21	25	25	1.99
11139--11235	42	2.3	41	80	3	122	29	21	21	26	1.99
11781--11876	42	2.3	41	81	1	111	30	25	22	21	1.99
11993--12092	42	2.4	41	78	5	112	29	21	25	25	1.99
12640--12736	42	2.3	41	80	3	122	29	21	21	26	1.99
13281--13376	42	2.3	41	81	1	111	30	25	22	21	1.99
13493--13592	42	2.4	41	78	5	112	29	21	25	25	1.99
14560--14665	42	2.5	42	83	1	124	31	23	20	24	1.98
14988--15093	42	2.6	41	77	5	115	29	19	23	27	1.98
15420--15521	42	2.5	41	80	3	114	29	22	21	26	1.99
17340--17445	42	2.6	41	77	5	115	29	19	23	27	1.98
17774--17875	42	2.5	41	80	3	123	29	22	21	26	1.99
18629--18729	42	2.4	41	77	3	112	31	20	21	25	1.98
19266--19371	42	2.6	41	77	5	115	29	19	23	27	1.98
19700--19801	42	2.5	41	80	3	114	29	22	21	26	1.99
20986--21086	42	2.4	41	77	3	112	31	20	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22268--22347	42	1.9	41	84	2	106	36	22	16	25	1.94
22484--22579	42	2.3	41	82	3	120	31	22	20	25	1.98
22692--22793	42	2.5	41	82	3	132	30	19	21	28	1.98
23332--23433	42	2.5	41	76	12	111	30	19	24	25	1.98
23765--23863	42	2.4	41	73	9	101	33	23	19	24	1.97
31230--31267	20	1.9	20	88	0	58	26	34	26	13	1.93
31252--31313	23	2.7	23	94	0	115	20	32	25	20	1.98
33634--33663	13	2.2	14	94	5	53	46	13	0	40	1.43
34026--34063	20	1.9	20	94	0	67	21	36	26	15	1.93
34761--34868	37	2.9	37	91	2	173	18	17	22	41	1.90
40415--40470	21	2.6	21	88	2	85	16	17	21	44	1.86
43892--43968	3	27.0	3	73	10	54	57	1	0	41	1.07
43896--43973	17	5.0	15	74	18	70	53	1	0	44	1.08
43902--43968	23	3.0	23	82	2	73	55	1	0	43	1.09
48783--48812	12	2.5	12	100	0	60	33	6	26	33	1.83
49842--49870	15	2.0	15	93	6	51	58	13	13	13	1.63
50140--50203	21	3.0	21	86	4	92	23	25	23	28	2.00
50987--51022	7	5.1	7	89	0	54	27	25	2	44	1.68
55785--55813	15	2.0	15	93	6	51	58	13	13	13	1.63
56086--56149	21	3.0	21	86	4	92	23	25	23	28	2.00
56933--56968	7	5.1	7	89	0	54	27	25	2	44	1.68
60935--60968	17	2.1	16	88	5	50	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61848--61900	23	2.3	23	86	0	70	13	22	13	50	1.75
63512--63588	20	3.8	20	79	6	75	31	28	11	28	1.92
63530--63586	21	2.8	20	91	2	96	29	26	12	31	1.92
63512--63615	41	2.5	41	82	3	120	31	25	11	30	1.91
63559--63683	40	3.1	40	72	14	103	28	20	13	36	1.91
63844--63881	16	2.5	15	84	12	51	28	5	0	65	1.14
68761--68878	21	5.7	20	75	7	101	23	17	35	22	1.95
68761--68881	42	2.9	42	82	4	145	24	18	34	22	1.96
68758--68875	63	1.9	62	84	5	157	23	17	36	22	1.95
69178--69299	63	1.9	63	80	6	140	31	31	13	22	1.92
70879--70917	20	2.0	20	89	0	60	17	12	15	53	1.72
70881--70925	20	2.2	20	84	0	54	20	13	15	51	1.76
71247--71325	22	3.6	22	84	0	86	21	13	40	24	1.90
71785--71845	31	2.0	31	83	6	79	36	36	8	19	1.82

Tables:   1

The End!