genome.fa.s7455.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007455.1 Hibiscus syriacus cultivar Beakdansim tig00020417_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129383

Tables:   1   

This is table  1  of  1  ( 117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6103--6194	18	5.2	18	92	2	141	17	47	19	15	1.82
7497--7532	18	2.0	18	88	0	54	52	0	16	30	1.44
8938--8964	2	13.5	2	100	0	54	48	0	0	51	1.00
9809--9909	37	2.7	37	82	0	121	30	14	18	35	1.92
16799--16927	42	3.1	42	86	0	204	39	20	10	28	1.87
24346--24398	26	2.0	27	85	10	74	50	3	5	39	1.44
24572--24615	2	22.0	2	100	0	88	50	0	0	50	1.00
30388--30493	45	2.4	45	100	0	212	32	16	23	28	1.96
30476--30564	46	2.0	46	90	2	144	26	17	26	28	1.98
31753--31802	21	2.4	21	100	0	100	36	18	32	14	1.90
37289--37328	21	1.9	21	85	10	55	35	7	5	52	1.51
39320--39411	46	2.0	46	89	2	141	28	18	25	28	1.98
41105--41329	49	4.3	49	83	12	306	42	0	12	45	1.41
41154--41273	60	2.0	60	93	0	204	41	0	11	46	1.40
41097--41364	109	2.5	109	94	1	457	43	0	10	45	1.39
41537--41722	19	10.1	19	65	26	89	35	0	13	50	1.47
41546--41719	35	4.8	35	86	8	258	35	0	13	50	1.46
41536--41719	11	19.9	9	70	22	68	35	0	13	50	1.46
41572--41709	8	16.5	8	69	21	63	36	0	12	50	1.45
41642--41738	49	2.0	48	91	2	158	39	1	11	48	1.46
41711--41820	26	4.4	26	81	12	124	45	1	9	43	1.46
41651--41814	86	1.9	86	86	7	235	42	1	10	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41722--41820	23	4.1	23	84	6	108	46	2	8	43	1.44
41711--41917	14	16.5	13	70	21	97	46	3	7	42	1.49
41811--41855	21	2.1	22	83	4	56	42	2	6	48	1.41
41651--41926	135	2.0	135	82	10	332	44	2	9	43	1.50
41721--41939	14	17.7	12	70	15	76	47	4	6	42	1.48
43317--43350	14	2.4	14	95	0	59	52	0	0	47	1.00
44661--44685	4	6.2	4	100	0	50	52	24	0	24	1.48
49696--49760	13	5.0	13	82	0	76	32	20	23	24	1.98
53821--53866	18	2.6	18	86	10	60	23	8	4	63	1.42
54394--54446	21	2.5	21	81	6	63	20	24	18	35	1.95
54436--54529	20	4.7	20	86	2	125	39	19	22	19	1.93
54436--54529	41	2.3	41	87	1	127	39	19	22	19	1.93
55080--55172	33	2.8	33	86	1	114	45	24	19	10	1.82
55173--55226	14	3.5	14	73	22	54	9	22	22	46	1.80
55168--55275	33	3.1	33	80	10	117	11	24	19	45	1.82
55212--55275	20	3.1	21	82	8	78	10	25	17	46	1.80
56962--57239	94	3.1	92	86	8	392	22	11	17	48	1.80
57328--57408	19	4.2	19	92	3	135	49	19	22	8	1.75
57334--57417	19	4.4	19	83	10	100	47	21	20	10	1.80
57424--57512	33	2.7	33	89	1	133	11	19	22	47	1.81
57454--57512	19	3.4	18	73	22	63	11	22	20	45	1.83
57995--58055	21	3.0	20	69	7	50	22	37	18	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59407--59442	14	2.6	14	95	0	63	33	0	22	44	1.53
59549--59616	19	3.8	19	74	20	65	48	20	19	11	1.80
59549--59642	33	2.8	33	85	3	127	47	22	18	11	1.80
59581--59657	19	4.3	19	73	18	67	48	24	14	12	1.79
59653--59770	19	6.7	19	64	19	67	13	22	19	44	1.85
59657--59750	33	2.8	33	93	0	161	13	21	18	46	1.83
59723--59816	20	4.7	20	72	13	68	21	20	23	35	1.96
62296--62347	24	2.2	24	82	0	59	36	21	19	23	1.95
63208--63628	41	10.4	40	86	4	413	33	18	20	27	1.96
63208--63628	61	6.9	60	83	5	413	33	18	20	27	1.96
63208--63628	183	2.3	182	81	6	458	33	18	20	27	1.96
63208--63628	20	20.7	19	82	8	322	33	18	20	27	1.96
63582--63627	21	2.2	21	88	7	67	39	17	26	17	1.91
65058--65098	20	2.0	20	86	9	57	9	4	36	48	1.58
66314--66403	43	2.1	43	81	4	101	28	12	5	53	1.60
66389--66471	42	2.0	42	82	2	103	25	19	7	48	1.74
66457--66650	53	3.9	50	73	19	165	24	19	6	48	1.72
66413--66685	94	2.9	95	83	8	344	25	19	6	48	1.73
66601--66851	43	5.8	42	75	11	222	27	17	8	47	1.76
66605--66829	87	2.6	85	85	8	276	27	16	8	48	1.74
68109--68143	17	2.1	17	100	0	70	28	0	17	54	1.43
68940--68999	31	2.1	28	82	14	70	30	18	16	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71498--71538	13	3.0	13	86	13	64	24	24	0	51	1.49
71498--71537	15	2.8	15	92	7	66	25	25	0	50	1.50
72802--73158	193	1.8	193	83	3	468	37	12	11	38	1.79
80108--80593	243	2.0	241	94	4	863	28	19	19	32	1.96
83365--83398	17	2.0	17	94	0	59	50	17	11	20	1.77
86026--86473	52	8.6	52	91	2	722	29	25	15	29	1.96
86459--86744	55	5.3	55	86	5	413	28	29	14	27	1.95
86459--86744	104	2.6	108	87	7	418	28	29	14	27	1.95
87896--88032	8	16.8	8	75	11	93	10	9	0	79	0.97
87909--87938	11	2.6	11	94	5	51	0	16	0	83	0.65
87896--88021	9	13.1	9	72	24	71	9	9	0	80	0.96
87940--88030	18	5.4	17	77	12	89	12	8	0	79	0.94
87896--88032	34	4.2	32	73	17	113	10	9	0	79	0.97
87911--88030	9	13.8	9	72	19	78	10	10	0	79	0.95
94439--94472	17	2.0	17	94	0	59	50	17	11	20	1.77
96834--96916	3	27.7	3	85	9	98	61	0	0	38	0.96
96834--96916	29	2.8	29	87	5	103	61	0	0	38	0.96
101571--101669	49	1.9	54	82	10	127	56	2	2	39	1.22
101793--101831	18	2.2	18	85	0	51	28	25	10	35	1.89
104645--104702	21	2.7	23	77	20	63	65	3	3	27	1.25
108290--108389	42	2.4	42	81	5	114	31	19	20	30	1.96
108701--108842	57	2.6	53	77	11	146	39	16	12	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109985--110027	4	10.8	4	85	9	61	0	25	0	74	0.82
109993--110041	13	3.8	13	86	7	57	0	24	0	75	0.80
110000--110059	13	4.6	13	76	14	52	0	21	0	78	0.75
110018--110082	18	3.6	18	83	10	71	3	15	0	81	0.81
109989--110082	8	11.2	8	74	18	59	2	19	0	78	0.85
109989--110082	19	5.1	17	74	20	57	2	19	0	78	0.85
110021--110096	10	7.7	10	80	12	68	5	13	1	80	0.95
110048--110096	19	2.6	19	90	0	71	8	8	2	81	0.94
110004--110096	28	3.2	28	82	14	86	4	16	1	78	0.96
112245--112348	50	2.1	50	83	7	131	29	12	7	50	1.68
114023--114270	44	5.6	44	89	0	361	20	25	22	31	1.98
120877--121011	16	8.6	16	73	16	61	76	0	21	1	0.92
120900--121012	15	7.3	16	74	17	73	76	0	23	0	0.85
120917--120995	9	9.1	9	85	10	103	77	0	21	1	0.84
120902--120995	36	2.7	35	80	15	113	75	0	23	1	0.87
120917--121011	52	1.9	49	79	14	106	77	0	21	1	0.82
120938--121001	25	2.6	24	76	11	58	79	0	20	0	0.73
120911--121017	7	14.7	7	75	14	69	76	0	21	1	0.88
120901--121012	28	4.0	29	75	16	110	76	0	22	0	0.84
120911--121012	24	4.1	24	80	12	73	77	0	21	0	0.83
123344--123441	42	2.3	42	94	0	178	24	20	18	36	1.94
123377--123440	20	3.1	20	68	16	58	25	18	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123449--123809	142	2.6	139	83	3	472	25	26	14	32	1.95
123691--123916	84	2.7	84	83	6	296	25	26	17	30	1.97
123917--123974	19	3.1	19	70	7	55	27	20	25	25	1.99
123909--123961	19	2.7	20	76	5	63	26	22	28	22	1.99
124992--125307	133	2.3	134	79	9	336	36	17	19	26	1.94
128194--128234	2	20.5	2	100	0	82	51	0	0	48	1.00
129191--129226	17	2.1	18	90	10	58	19	0	8	72	1.10

Tables:   1

The End!