genome.fa.s7459.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007459.1 Hibiscus syriacus cultivar Beakdansim tig00020453_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81064

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1205--1240	18	2.0	18	88	0	54	27	27	22	22	1.99
16140--16171	2	16.0	2	100	0	64	50	50	0	0	1.00
16896--16950	27	2.1	27	82	3	67	29	21	7	41	1.80
18964--19014	22	2.3	22	83	6	59	47	5	3	43	1.46
20199--20581	182	2.1	179	90	3	599	42	3	8	46	1.50
20881--20919	2	19.5	2	100	0	78	51	0	0	48	1.00
26400--26447	15	3.5	15	81	16	59	25	0	0	75	0.81
26401--26440	11	3.6	11	87	9	55	22	0	0	77	0.77
27340--27453	59	1.9	60	80	1	131	26	22	21	28	1.99
29075--29118	20	2.2	20	100	0	88	47	0	29	22	1.51
29934--30246	103	3.0	103	95	1	556	26	13	23	36	1.91
30268--30333	23	2.9	23	90	0	96	21	28	24	25	1.99
34231--34274	20	2.2	20	100	0	88	47	0	29	22	1.51
35089--35412	103	3.1	103	95	0	569	27	13	23	35	1.93
35421--35488	23	3.0	23	85	8	93	20	26	26	26	1.99
38419--38458	19	2.1	19	85	0	53	60	5	2	32	1.32
46217--46254	19	2.0	20	94	5	69	28	15	28	26	1.96
46222--46380	63	2.5	62	85	4	194	32	18	22	27	1.97
47698--47733	18	2.0	18	100	0	72	11	22	33	33	1.89
47669--47977	62	5.1	61	62	25	152	26	15	23	35	1.94
47595--48079	121	4.0	121	95	0	871	25	15	23	35	1.94
47819--47854	18	2.0	18	88	0	54	16	19	30	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47610--47915	59	5.1	58	62	24	132	26	15	22	34	1.94
47940--47975	18	2.0	18	94	0	63	13	22	30	33	1.93
48086--48146	23	2.7	23	84	0	86	19	24	27	27	1.99
51961--51998	19	2.0	20	94	5	69	28	15	28	26	1.96
51967--52124	63	2.5	63	82	6	185	33	19	20	26	1.96
53180--53215	18	2.0	18	94	0	63	13	22	30	33	1.93
53151--53341	61	3.1	61	65	25	159	26	15	23	35	1.94
53077--53554	239	2.0	237	93	2	807	26	14	23	35	1.93
53077--53554	118	4.0	120	93	2	797	26	14	23	35	1.93
53216--53398	57	3.1	57	64	27	148	27	15	21	34	1.94
53561--53621	23	2.7	23	84	0	86	21	26	26	26	1.99
67076--67182	36	3.0	36	98	0	205	28	22	22	27	1.99
71296--71343	20	2.3	22	79	17	57	39	2	4	54	1.32
76925--76961	17	2.2	16	90	4	56	45	0	0	54	1.00
77151--77189	20	1.9	21	94	5	71	53	0	0	46	1.00
77744--77804	25	2.6	22	72	18	61	36	11	6	45	1.66
80088--80385	128	2.3	130	86	3	424	41	14	12	31	1.82
80088--80442	128	2.8	128	81	5	396	41	14	11	31	1.83

Tables:   1

The End!