genome.fa.s7475.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007475.1 Hibiscus syriacus cultivar Beakdansim tig00020550_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  249424

Tables:   1   2   

This is table  1  of  2  ( 138 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17424--17570	74	2.0	73	98	1	285	38	8	27	26	1.84
17840--17884	18	2.5	18	85	0	63	42	15	20	22	1.89
24169--24208	20	2.0	20	95	0	71	27	15	12	45	1.82
24172--24213	20	2.1	20	86	0	57	30	16	9	42	1.80
26425--26814	96	4.1	96	82	5	468	36	14	17	32	1.90
26405--26793	191	2.0	191	87	5	556	36	14	16	32	1.89
26760--26817	21	2.6	23	78	13	66	31	15	17	36	1.91
27863--27950	27	3.3	27	95	0	158	21	22	17	38	1.93
30196--30246	21	2.4	21	93	0	84	13	17	27	41	1.87
32291--32330	18	2.2	19	86	4	55	45	10	2	42	1.51
32963--33015	21	2.5	21	93	0	88	28	30	22	18	1.98
33030--33246	42	5.3	42	93	3	379	21	20	22	35	1.96
33030--33246	82	2.6	82	94	1	380	21	20	22	35	1.96
33338--33399	6	10.3	6	100	0	124	33	48	17	0	1.48
33995--34027	15	2.2	15	100	0	66	15	21	27	36	1.93
34033--34106	21	3.6	21	80	7	98	33	24	22	18	1.97
34630--34705	32	2.3	33	82	8	93	47	3	1	47	1.29
34625--34672	22	2.2	21	82	14	53	50	2	0	47	1.12
34640--34699	32	1.9	32	89	3	95	48	5	0	46	1.24
35250--35301	25	2.1	25	82	10	63	36	5	1	55	1.35
35302--35358	25	2.3	25	79	14	64	24	8	8	57	1.57
35741--35802	19	3.2	20	77	6	65	50	8	6	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36568--36621	17	3.2	17	76	2	56	48	0	1	50	1.11
37871--37931	31	2.0	31	100	0	122	37	22	13	26	1.91
39654--39708	16	3.4	16	83	14	60	72	7	1	18	1.16
39721--39782	25	2.4	25	76	7	63	66	3	9	20	1.35
40923--41539	133	4.6	133	89	1	905	28	19	21	30	1.98
41189--41527	44	7.7	44	64	8	123	26	20	21	30	1.98
40758--41539	266	3.0	264	85	4	1027	27	19	21	31	1.97
41672--41745	33	2.2	33	100	0	148	32	14	18	33	1.92
56732--56771	21	1.9	21	89	0	62	10	25	40	25	1.86
56753--56814	20	2.9	21	78	9	63	19	25	33	20	1.96
60560--60599	21	1.9	21	85	10	55	35	10	2	52	1.48
63526--63580	16	3.4	16	83	14	60	72	7	1	18	1.16
63594--63654	25	2.4	25	78	8	70	65	4	9	19	1.40
66018--66093	22	3.5	22	94	3	136	39	5	0	55	1.23
66009--66093	43	2.0	42	93	2	143	36	7	0	56	1.27
69641--69694	22	2.5	22	81	6	65	22	0	7	70	1.12
74092--74127	18	2.0	18	88	0	54	50	8	13	27	1.71
75834--75878	2	22.5	2	100	0	90	48	0	0	51	1.00
76076--76125	26	2.0	25	88	4	73	46	0	6	48	1.27
79007--79061	12	4.8	12	73	13	53	65	9	0	25	1.22
82567--82727	83	1.9	83	92	2	270	41	3	9	45	1.54
83405--83482	21	3.7	21	71	6	68	58	0	38	2	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83436--83475	12	3.3	12	86	10	55	55	0	42	2	1.13
83436--83505	27	2.6	27	76	0	77	60	1	35	2	1.21
84537--85263	262	2.8	260	81	6	785	48	6	12	32	1.67
85290--85971	4	171.5	4	96	1	1039	45	24	4	25	1.72
86345--86383	17	2.3	17	86	8	53	58	2	0	38	1.12
89071--89105	2	17.5	2	100	0	70	48	0	0	51	1.00
89213--89256	23	1.9	23	86	9	63	45	0	2	52	1.13
91067--91404	118	2.9	118	90	2	518	37	9	21	30	1.86
91067--91621	59	9.4	59	76	7	453	38	9	21	29	1.86
91712--91812	45	2.2	45	91	3	159	36	5	20	36	1.77
97543--98352	59	13.7	59	81	5	875	38	9	21	30	1.85
97534--98454	118	7.8	120	80	5	798	38	9	21	29	1.86
97534--98296	177	4.3	177	94	0	1321	38	9	21	30	1.85
98600--98700	45	2.2	45	89	3	150	36	5	21	35	1.78
102840--102910	21	3.2	21	79	14	81	23	21	32	22	1.98
102840--102922	23	3.7	23	81	7	82	22	21	30	25	1.99
107394--107446	19	2.7	19	82	8	54	37	11	5	45	1.64
108847--108910	22	2.9	23	82	15	73	21	18	34	25	1.96
108876--108931	21	2.7	21	94	0	94	19	19	37	23	1.94
109011--109068	30	2.0	29	90	10	91	44	17	5	32	1.70
109011--109070	29	2.0	30	93	6	104	43	16	6	33	1.74
110641--110679	21	1.9	20	85	15	53	25	10	23	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113544--114455	59	15.4	59	80	6	938	38	10	21	29	1.87
113535--114359	177	4.7	177	93	0	1328	37	10	21	30	1.87
114601--114713	45	2.5	45	91	5	176	38	6	20	34	1.78
123877--123942	28	2.4	28	89	0	96	31	21	7	39	1.81
123891--123949	28	2.1	28	83	0	73	35	20	5	38	1.75
124217--124254	17	2.2	17	100	0	76	47	10	18	23	1.79
124376--124440	33	2.0	33	96	0	121	27	18	10	43	1.83
130344--130374	15	2.0	16	93	6	55	41	0	0	58	0.98
131296--131345	21	2.3	23	86	10	70	46	0	0	54	1.00
131308--131353	10	4.5	10	78	21	51	41	0	0	58	0.98
131281--131391	53	2.1	53	78	9	120	50	0	0	48	1.06
131279--131341	23	2.6	25	78	19	71	50	0	0	49	1.00
131349--131399	23	2.2	23	89	6	77	52	1	0	45	1.12
131383--131471	32	2.9	32	81	17	93	43	0	1	55	1.07
131323--131479	28	5.3	29	71	19	103	46	0	0	52	1.10
131432--131502	19	3.7	19	73	14	65	49	1	1	47	1.18
131315--131482	32	5.5	30	67	20	91	46	0	0	52	1.09
131497--131541	23	2.0	23	86	0	63	53	2	2	42	1.25
132341--132452	59	1.9	59	83	9	147	30	9	20	39	1.85
135032--135155	59	2.1	60	81	1	142	34	16	12	36	1.86
135416--135456	20	2.0	20	90	0	64	24	12	17	46	1.82
136164--136254	46	2.0	46	100	0	182	25	21	8	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143716--143744	9	3.2	9	100	0	58	75	0	24	0	0.80
145051--145830	182	4.3	182	86	2	1057	44	13	14	27	1.82
146296--146388	19	4.9	19	78	2	98	47	3	15	34	1.61
146296--146388	37	2.5	37	82	7	107	47	3	15	34	1.61
147727--147841	24	4.8	24	87	4	160	40	20	14	25	1.90
147707--147858	72	2.1	71	80	8	182	43	19	12	24	1.86
150337--150381	7	5.6	8	84	15	58	26	24	33	15	1.95
150337--150381	15	2.9	15	93	6	72	26	24	33	15	1.95
150397--150428	13	2.5	13	100	0	64	18	15	46	18	1.84
150373--150433	31	2.0	31	83	0	77	22	18	42	16	1.89
151819--151874	24	2.5	22	77	13	60	41	1	7	50	1.40
152105--152146	9	4.7	9	84	0	57	33	2	54	9	1.46
152105--152154	18	2.8	18	87	0	64	34	4	52	10	1.54
154070--154114	19	2.4	19	96	0	81	33	0	8	57	1.30
154490--155587	199	5.5	199	92	0	1730	41	15	14	28	1.86
155935--155992	15	3.7	15	80	15	64	24	44	1	29	1.63
157139--157182	3	14.7	3	85	0	61	38	2	31	27	1.69
158444--158501	24	2.4	24	91	2	89	39	0	12	48	1.40
158458--158494	18	2.1	18	89	0	56	37	0	10	51	1.37
158679--159445	200	3.8	198	84	5	879	41	16	13	28	1.87
158679--159443	399	1.9	401	83	4	1001	41	16	13	28	1.87
159451--159613	87	1.9	87	96	0	299	30	14	13	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159535--159579	23	2.0	23	90	0	72	37	17	8	35	1.81
161486--161546	31	1.9	31	87	9	88	42	1	16	39	1.58
161491--161557	30	2.2	31	82	12	77	46	1	14	37	1.55
176413--176628	45	4.8	45	91	2	319	30	21	7	39	1.82
180541--180860	55	5.8	55	85	2	392	30	18	17	33	1.94
183971--184009	21	1.9	20	84	5	51	38	17	15	28	1.91
196514--196668	77	2.0	78	80	9	174	43	5	9	41	1.60
199006--199202	75	2.6	76	85	3	254	20	24	31	22	1.98
201787--201826	21	1.9	21	94	0	71	12	25	37	25	1.91
201809--201868	19	2.9	19	79	18	59	20	26	31	21	1.98

Tables:   1   2