genome.fa.s7477.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007477.1 Hibiscus syriacus cultivar Beakdansim tig00020573_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79736

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3145--3228	30	2.8	30	91	5	127	30	40	0	28	1.57
6411--6464	14	3.9	14	75	15	51	14	24	12	48	1.79
6444--6498	29	1.9	28	85	3	74	21	18	12	47	1.82
8672--8833	76	2.1	76	87	3	238	30	15	11	43	1.81
8836--9226	39	10.0	39	91	0	539	28	19	17	35	1.94
8991--9127	19	7.0	20	60	14	61	28	19	16	35	1.93
8934--9033	19	5.2	19	64	13	60	30	20	18	32	1.96
9259--9330	37	2.0	36	84	13	94	26	19	11	43	1.84
9408--9528	36	3.4	35	90	4	188	23	22	15	38	1.92
9471--9649	74	2.4	75	79	4	200	31	18	13	35	1.90
9408--9644	36	6.4	36	75	6	179	28	19	14	36	1.92
10052--11428	44	31.2	44	64	9	352	28	19	21	30	1.98
9939--11428	132	11.2	132	92	1	2241	28	20	20	30	1.98
9939--11428	265	5.6	264	91	1	2268	28	20	20	30	1.98
11770--11876	29	3.7	29	92	3	171	31	43	0	24	1.54
13650--13699	18	2.8	18	93	0	91	50	0	2	48	1.12
14147--14177	2	15.5	2	100	0	62	48	0	0	51	1.00
14403--14467	33	2.0	33	81	6	78	53	3	1	41	1.25
15071--15114	23	1.9	23	81	9	54	65	4	2	27	1.23
15280--15332	28	1.9	28	88	3	81	26	3	7	62	1.39
15916--15958	23	2.0	21	86	9	59	58	4	2	34	1.32
30878--31236	139	2.6	139	87	3	519	26	20	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30878--31223	137	2.5	138	88	2	491	26	20	15	38	1.91
31274--31683	112	3.6	113	91	1	671	27	19	14	38	1.91
31517--31560	23	2.0	22	82	13	54	15	25	6	52	1.68
31160--31698	224	2.3	230	87	5	770	26	20	14	38	1.91
32496--32616	22	5.5	22	89	0	188	41	13	12	33	1.81
33914--34090	76	2.3	76	85	0	221	31	23	15	29	1.96
37132--37169	18	2.2	18	90	9	62	0	18	0	81	0.69
37465--37512	2	24.0	2	100	0	96	50	0	0	50	1.00
39107--39131	12	2.1	12	100	0	50	52	8	16	24	1.70
39193--39234	7	6.0	7	78	10	50	54	14	16	14	1.71
40725--40782	28	2.1	28	84	6	75	60	1	5	32	1.29
41287--41549	138	1.9	137	81	4	318	45	8	7	38	1.63
48581--48626	24	1.9	24	90	0	74	32	21	26	19	1.97
48621--48716	47	2.1	46	84	5	122	34	25	20	19	1.96
48622--48713	23	4.0	23	75	8	87	34	26	19	19	1.96
50903--50935	2	17.0	2	93	6	59	51	0	0	48	1.00
50862--50974	55	2.1	54	85	8	149	45	0	6	47	1.34
50923--51293	37	9.9	37	80	11	400	44	3	9	42	1.55
51338--51371	13	2.5	14	95	4	61	20	2	0	76	0.92
52474--52530	25	2.3	24	83	13	80	5	22	1	70	1.17
54908--54994	42	2.0	43	82	10	108	29	9	2	58	1.41
56928--56963	9	4.0	9	85	0	54	33	13	0	52	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57193--57232	21	1.9	21	100	0	80	32	30	22	15	1.94
59426--59478	19	2.8	18	86	11	63	77	5	15	1	1.04
65579--65618	20	2.0	21	85	14	57	40	32	10	17	1.83
75266--75308	22	2.0	22	90	0	68	39	13	25	20	1.90
75586--76051	201	2.3	200	79	4	483	32	18	20	28	1.96
76536--76563	2	14.0	2	100	0	56	50	0	0	50	1.00
76493--76597	48	2.3	47	93	5	178	47	1	4	45	1.34
76548--76991	35	12.8	35	81	11	497	43	3	9	43	1.54
76548--76934	69	5.5	70	85	11	492	44	3	8	43	1.52
77040--77083	4	10.8	4	86	13	63	22	0	0	77	0.77
77038--77089	21	2.4	22	87	12	81	21	0	0	78	0.74
77039--77089	8	5.9	9	84	11	63	21	0	0	78	0.75
77040--77083	12	3.5	13	90	9	74	22	0	0	77	0.77
78140--78217	30	2.7	29	81	11	81	17	12	2	66	1.35
78173--78230	30	2.0	29	82	3	71	20	8	1	68	1.25
79176--79343	56	3.0	56	84	12	218	34	23	4	38	1.74
79210--79312	29	3.6	28	72	10	84	36	19	4	38	1.73
79176--79381	114	1.8	113	82	9	267	33	24	4	37	1.75

Tables:   1

The End!