genome.fa.s7488.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007488.1 Hibiscus syriacus cultivar Beakdansim tig00020680_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138872

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2525--2589	12	5.4	12	74	7	60	53	13	16	15	1.73
2525--2593	24	2.9	24	88	0	102	52	14	15	17	1.75
6059--6129	24	3.0	24	89	4	99	56	12	14	16	1.68
9530--9591	32	1.9	32	86	0	88	37	27	24	11	1.89
9757--9848	12	7.7	12	73	0	85	50	15	18	16	1.79
9757--9853	24	4.0	24	93	0	158	51	15	17	15	1.77
12354--12465	24	4.7	24	92	4	172	36	22	18	22	1.95
12354--12460	12	8.8	13	65	15	68	37	23	17	21	1.94
15468--15528	23	2.7	23	97	0	113	32	18	36	13	1.89
17778--17892	12	9.7	12	68	1	61	56	12	14	16	1.67
17785--17892	24	4.5	24	81	2	119	56	12	14	15	1.68
17785--17876	47	1.9	48	84	2	123	55	11	15	17	1.69
21064--21106	19	2.3	19	100	0	86	32	11	20	34	1.89
21378--21452	32	2.4	31	82	4	87	37	29	21	12	1.89
25153--25232	5	14.8	5	75	14	70	8	21	50	20	1.75
25146--25232	22	4.0	22	95	0	156	10	21	48	19	1.79
25231--25328	19	5.1	19	80	13	101	28	27	26	17	1.98
25229--25327	9	10.3	9	80	10	90	28	27	28	16	1.97
25230--25327	29	3.4	28	85	5	124	28	27	27	16	1.97
32493--32572	5	14.8	5	75	14	70	8	22	50	18	1.74
32486--32572	22	4.0	22	96	0	165	10	22	48	18	1.78
32569--32667	9	10.3	9	77	10	81	28	26	28	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32571--32668	19	5.1	19	78	13	92	28	26	26	18	1.98
32569--32647	10	8.3	10	72	24	64	26	27	29	16	1.97
40559--40593	18	1.9	18	94	0	61	14	22	45	17	1.84
47512--47736	112	2.0	112	97	0	425	34	8	7	49	1.61
53617--53650	17	2.0	17	94	0	59	44	5	11	38	1.65
62995--63041	23	2.0	23	95	0	85	27	23	19	29	1.98
68695--68770	24	3.2	24	86	3	73	44	18	11	25	1.83
68712--68845	24	5.6	24	81	7	119	41	17	14	26	1.88
77333--77382	25	1.9	27	84	8	68	36	10	14	40	1.79
77524--77563	21	2.0	20	85	5	53	42	0	2	55	1.13
80793--80911	24	5.0	25	80	10	115	42	17	14	26	1.87
80800--80911	48	2.3	48	84	6	138	41	17	14	26	1.88
83316--83363	18	2.7	18	93	0	78	10	16	50	22	1.76
85448--85523	24	3.2	24	81	3	64	46	18	13	22	1.83
85466--85580	24	4.8	24	84	6	144	41	19	14	24	1.89
85471--85603	72	1.9	71	84	7	180	44	18	13	24	1.85
86775--86815	18	2.3	19	79	12	50	26	14	4	53	1.61
88067--88097	13	2.4	13	94	0	53	16	19	48	16	1.81
90175--90224	27	1.9	27	88	8	77	36	12	14	38	1.83
94243--94292	27	1.9	27	88	8	77	36	12	14	38	1.83
94434--94473	21	2.0	20	85	5	53	42	0	2	55	1.13
106376--106708	166	2.0	166	98	1	643	38	6	19	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107230--107259	13	2.3	13	94	0	51	20	46	20	13	1.83
120873--120921	20	2.5	20	100	0	98	30	20	14	34	1.92
127333--127577	29	8.6	29	84	4	209	38	18	5	37	1.75

Tables:   1

The End!