Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007495.1 Hibiscus syriacus cultivar Beakdansim tig00020730_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  426237

Tables:   1   2   

This is table  2  of  2  ( 158 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
329665--329716
21
2.6
21
90
6
81
34
13
5
46
1.67
330401--330472
12
6.4
11
78
12
58
76
1
19
2
0.99
330395--330459
11
6.1
10
72
18
51
80
1
15
3
0.92
330412--330471
23
2.6
23
80
17
70
78
0
18
3
0.89
332978--333015
19
2.1
18
85
9
51
39
18
5
36
1.73
333822--333873
21
2.6
21
90
6
81
34
13
5
46
1.67
334552--334615
15
4.2
15
78
9
60
78
3
14
4
1.04
337139--337176
19
2.1
18
85
9
51
39
18
5
36
1.73
337983--338034
21
2.6
21
87
6
72
36
13
5
44
1.68
339717--339776
17
3.5
17
95
0
102
40
6
18
35
1.77
339714--339794
34
2.4
34
82
0
99
39
11
16
33
1.83
349307--349376
24
3.0
23
83
8
70
35
22
20
21
1.96
350770--350824
24
2.3
25
81
6
60
32
16
21
29
1.95
356979--357030
21
2.6
21
84
6
72
36
11
5
46
1.64
357753--357806
18
2.9
18
84
15
58
75
0
20
3
0.95
364087--364130
20
2.2
20
87
0
61
84
0
15
0
0.63
391844--391881
19
2.1
19
85
9
53
39
5
15
39
1.70
394625--394676
20
2.5
20
77
20
54
63
0
9
26
1.25
395900--395937
19
2.1
19
85
9
53
39
5
15
39
1.70
398254--398356
15
7.0
15
90
4
165
49
0
0
50
1.00
398254--398356
29
3.5
30
94
4
183
49
0
0
50
1.00
398269--398811
32
18.4
31
68
24
202
37
0
10
51
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
398378--398456
22
4.4
18
68
23
58
32
0
12
54
1.38
398391--398483
22
3.8
22
71
24
78
35
0
11
52
1.38
398342--398923
54
10.8
54
78
8
623
35
0
11
52
1.40
398441--398693
76
3.3
76
86
4
371
35
0
12
51
1.42
398575--398639
22
3.0
22
95
0
121
36
0
12
50
1.40
398651--398693
22
2.0
22
90
0
68
41
2
6
48
1.43
398342--398929
264
2.2
268
86
7
786
35
0
11
52
1.41
398871--398913
22
2.0
22
95
0
77
34
0
11
53
1.37
398938--398996
31
1.9
31
92
0
100
42
10
6
40
1.65
399949--399996
23
2.2
23
85
7
64
35
22
14
27
1.93
401025--401865
415
2.0
418
93
2
1424
27
22
14
34
1.94
406063--406124
17
3.8
16
78
19
58
74
4
16
4
1.17
406082--406124
14
2.8
14
83
16
50
74
2
16
6
1.14
412661--412686
5
5.2
5
100
0
52
23
38
19
19
1.93
419478--419507
13
2.3
13
94
0
51
36
23
16
23
1.94
423671--423699
4
7.5
4
92
7
51
75
0
0
24
0.80

Tables:   1   2

The End!