genome.fa.s750.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000750.1 Hibiscus syriacus cultivar Beakdansim tig00001445_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118013

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2592--2627	18	2.0	18	88	0	54	33	19	22	25	1.97
4301--4342	18	2.3	18	95	0	75	57	4	9	28	1.51
4536--4635	51	2.0	51	86	4	139	24	28	31	17	1.97
4536--4655	51	2.4	51	80	8	136	22	27	32	17	1.96
9050--9084	14	2.4	15	85	9	54	60	5	5	28	1.43
15330--15387	30	1.9	30	85	0	80	60	12	12	15	1.59
17039--17995	84	11.4	84	87	0	1297	23	19	22	34	1.96
19285--19428	32	4.5	32	75	17	138	14	9	36	39	1.79
19317--19435	32	3.4	36	82	13	158	12	10	37	39	1.77
19285--19435	63	2.3	63	85	7	194	13	9	36	39	1.79
20005--20051	18	2.7	18	86	3	69	27	29	8	34	1.87
24280--24336	2	28.5	2	100	0	114	50	0	0	49	1.00
25830--25883	23	2.4	23	84	3	74	51	7	22	18	1.70
27814--27883	35	2.0	35	97	0	131	18	11	21	48	1.79
36571--36618	24	2.0	25	83	4	62	64	0	0	35	0.94
36728--36794	33	2.0	33	94	0	116	38	14	8	37	1.78
40629--40741	60	1.9	60	89	7	176	33	11	16	38	1.85
42053--42102	20	2.5	20	96	0	91	30	6	20	44	1.75
42053--42113	20	3.0	20	90	0	68	29	4	19	45	1.71
45117--45220	36	2.9	36	86	0	136	40	23	15	21	1.91
47982--48055	29	2.6	29	100	0	148	39	10	20	29	1.86
49353--49422	29	2.4	30	88	4	108	38	11	17	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50515--50719	29	7.0	30	94	3	357	33	22	19	24	1.97
50515--50719	59	3.5	60	94	4	357	33	22	19	24	1.97
50726--50782	30	1.9	30	92	7	98	31	22	15	29	1.95
50998--56314	4	1343.5	4	80	12	5264	46	24	1	28	1.62
60875--60966	29	3.6	28	72	24	103	42	13	17	27	1.86
60878--60975	47	2.0	50	94	5	175	41	14	16	27	1.87
61601--61643	22	2.1	22	87	12	65	25	16	34	23	1.95
62209--62247	14	2.8	14	85	11	53	71	0	0	28	0.86
62214--62245	15	2.2	15	94	5	57	78	0	0	21	0.76
67713--67744	17	1.9	17	93	6	57	31	0	25	43	1.55
67772--67804	2	16.5	2	100	0	66	48	0	0	51	1.00
77200--77421	57	3.9	57	80	4	248	40	3	17	38	1.67
77500--77571	23	3.1	23	74	4	72	23	22	23	30	1.99
77492--77563	24	3.0	23	78	9	74	23	25	20	30	1.99
77559--77616	24	2.5	24	80	2	73	25	22	18	32	1.97
85606--85663	22	2.8	20	80	10	62	34	20	17	27	1.95
93081--93108	2	14.0	2	100	0	56	50	0	0	50	1.00
95824--95875	24	2.2	24	96	0	95	42	13	17	26	1.86
98828--98878	21	2.4	21	80	0	57	60	1	0	37	1.08
99307--99370	24	2.7	24	90	0	101	32	10	4	51	1.58
100324--100368	21	2.1	21	87	0	63	55	4	2	37	1.32
100582--100667	17	4.9	17	70	12	66	45	2	1	51	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100622--100648	11	2.5	11	100	0	54	44	7	0	48	1.31
100504--100661	84	1.9	83	83	10	205	44	3	1	50	1.25
100560--100735	55	3.2	55	82	7	209	47	2	1	48	1.24
100709--100738	15	2.0	15	100	0	60	53	0	0	46	1.00
101059--101109	24	2.1	24	85	0	66	27	5	9	56	1.54
115609--115649	21	2.0	21	85	9	57	24	17	24	34	1.96

Tables:   1

The End!