genome.fa.s751.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000751.1 Hibiscus syriacus cultivar Beakdansim tig00001454_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72346

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2007--2040	17	1.9	18	88	5	52	44	2	0	52	1.16
2085--2123	15	2.4	17	87	12	55	33	5	10	51	1.58
2339--2403	2	33.0	2	96	3	123	50	0	0	49	1.00
5602--5692	47	1.9	48	82	6	114	20	14	16	48	1.81
5622--5692	24	3.0	23	83	6	97	19	11	18	50	1.76
7089--7138	25	1.9	27	84	8	68	42	18	4	36	1.69
10617--10654	18	2.1	19	90	5	60	26	7	21	44	1.79
21872--21909	18	2.1	18	100	0	76	21	10	47	21	1.80
24144--24196	2	26.5	2	100	0	106	50	0	0	49	1.00
24353--24416	21	3.0	21	77	4	74	31	23	23	21	1.99
24353--24412	22	2.8	21	80	9	59	30	25	23	21	1.99
30560--30651	46	2.0	46	97	0	175	36	9	19	33	1.85
40222--40273	21	2.5	21	83	0	68	21	23	19	36	1.95
40263--40375	20	5.7	20	84	8	158	38	19	19	22	1.93
40322--40429	20	5.4	20	85	4	137	31	24	19	25	1.98
40263--40388	40	3.2	40	88	4	184	38	20	19	22	1.94
40282--40413	60	2.2	60	83	5	160	36	21	19	21	1.95
41270--41323	24	2.2	24	90	0	81	18	18	20	42	1.89
43736--43829	20	4.7	20	89	2	145	36	24	21	18	1.95
43801--44030	33	6.8	33	70	15	139	44	18	21	14	1.86
43985--44018	14	2.4	14	90	0	50	52	17	20	8	1.71
44068--44121	14	3.5	14	73	22	54	11	24	20	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44046--44141	33	2.9	34	90	3	149	12	23	20	42	1.86
44247--44283	14	2.6	14	86	0	56	48	21	0	29	1.50
45685--45777	42	2.2	42	80	3	107	24	17	37	20	1.93
46257--46481	20	11.4	20	82	7	246	38	23	20	18	1.93
46260--46441	76	2.4	74	80	7	193	38	23	21	17	1.93
46256--46497	116	2.1	116	91	1	389	38	22	21	17	1.93
46557--46600	14	3.1	14	83	0	61	9	15	25	50	1.74
46512--46641	68	1.9	69	92	4	219	13	18	23	44	1.85
46524--46644	20	5.6	20	77	15	125	14	18	23	42	1.87
48545--48648	53	1.9	54	86	1	147	43	25	16	14	1.86
48525--48699	73	2.4	73	94	0	296	45	24	16	14	1.84
48526--48668	20	7.5	19	78	12	107	42	25	16	15	1.87
49036--49122	22	4.0	22	90	0	138	20	11	40	27	1.87
52447--52497	21	2.4	21	96	0	93	41	3	35	19	1.70
53031--53092	26	2.4	26	94	0	106	27	24	19	29	1.98
66072--66148	20	3.8	20	75	10	68	24	9	15	50	1.73
66141--66188	18	2.5	19	83	10	62	31	20	12	35	1.90
67104--67148	23	2.0	23	86	8	65	20	22	17	40	1.92
69392--69426	17	2.0	18	88	5	54	54	22	2	20	1.58
71218--71311	21	4.5	20	76	11	82	21	18	37	23	1.94
71218--71311	42	2.2	42	86	0	134	21	18	37	23	1.94
71233--71317	21	4.0	21	79	0	98	23	17	36	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71606--71728	63	2.0	63	83	3	158	30	33	14	21	1.94
71608--71765	63	2.5	63	79	6	151	29	34	14	21	1.93
71719--71768	21	2.4	21	79	0	55	32	32	14	22	1.93

Tables:   1

The End!