genome.fa.s7513.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007513.1 Hibiscus syriacus cultivar Beakdansim tig00020897_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69420

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544--758	41	5.2	40	74	16	163	47	8	16	26	1.75
719--956	93	2.5	96	82	8	299	50	7	18	24	1.72
891--972	42	2.0	42	82	4	103	48	7	18	25	1.73
2232--2272	20	2.0	20	86	9	57	48	36	4	9	1.58
3667--3775	19	5.6	20	80	8	100	33	21	20	25	1.97
3678--3990	20	15.6	20	83	7	325	25	21	18	34	1.96
3625--3979	40	8.8	40	80	8	314	25	21	18	34	1.96
3626--3979	161	2.2	159	83	7	414	25	22	18	34	1.96
4831--4883	23	2.3	22	84	9	70	20	16	20	41	1.90
7349--7403	19	2.8	19	83	2	65	38	21	21	18	1.94
7310--7403	20	4.7	20	71	13	68	35	23	20	21	1.96
7376--7467	31	2.9	32	88	4	141	46	18	20	14	1.83
7356--7434	19	4.4	19	73	16	69	44	20	21	13	1.86
7467--7511	19	2.4	19	84	0	63	15	13	24	46	1.82
7477--7574	33	3.0	32	83	4	126	11	18	22	47	1.80
7516--7574	19	3.4	18	71	22	54	11	20	20	47	1.81
7681--7717	14	2.6	14	91	0	65	45	21	0	32	1.52
9567--9650	19	4.6	19	71	15	70	46	19	21	13	1.83
9590--9677	33	2.7	33	89	3	133	46	22	19	11	1.81
9622--9677	19	3.2	18	72	27	50	48	23	16	12	1.80
9696--9775	19	4.2	19	88	6	126	8	22	20	48	1.76
9863--10138	93	3.1	92	85	10	383	47	17	11	22	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11824--11909	17	5.1	17	74	16	88	46	19	22	11	1.82
11865--11918	14	3.5	14	73	22	54	46	22	22	9	1.80
11821--11918	33	2.9	32	86	6	133	46	19	22	11	1.81
11919--12011	33	2.8	33	86	1	114	10	19	24	45	1.82
12554--12647	20	4.7	20	86	2	125	19	22	19	39	1.93
12554--12647	41	2.3	40	87	1	125	19	22	19	39	1.93
12644--12689	21	2.2	21	84	7	58	39	17	26	17	1.91
12890--12935	23	2.0	22	83	4	56	36	0	4	58	1.18
13209--13254	18	2.6	19	86	10	62	63	4	8	23	1.42
17277--17340	13	5.0	13	80	3	76	25	23	20	31	1.98
21576--21604	2	14.5	2	100	0	58	48	0	0	51	1.00
22331--22355	4	6.2	4	100	0	50	24	0	24	52	1.48
23663--23696	14	2.4	14	95	0	59	47	0	0	52	1.00
24964--25001	19	2.0	19	85	10	51	50	10	5	34	1.59
25103--25139	14	2.6	14	91	4	56	37	5	5	51	1.48
25131--25168	13	3.4	11	89	10	51	42	7	7	42	1.63
25126--25278	23	6.5	23	75	13	107	43	7	3	45	1.49
25211--25298	26	3.4	26	85	1	97	43	7	2	46	1.45
25278--25474	19	11.1	18	66	27	86	49	13	0	36	1.46
25281--25475	8	20.9	9	69	23	72	49	13	0	36	1.46
25300--25390	27	3.4	27	84	6	132	50	12	0	37	1.40
25180--25385	52	4.2	50	76	14	178	45	11	0	42	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25182--25420	87	2.8	86	85	5	279	46	11	1	41	1.48
25352--25465	35	3.3	35	93	0	201	51	13	0	34	1.47
25678--25799	46	2.6	48	87	8	171	46	11	0	41	1.40
25657--25906	106	2.3	108	93	2	425	45	10	0	43	1.42
25732--25865	60	2.2	61	89	5	200	46	11	0	41	1.46
25784--25898	48	2.3	49	91	2	178	44	12	0	42	1.47
27591--27682	46	2.0	46	89	2	141	28	25	18	28	1.98
35357--35386	13	2.4	13	94	5	53	26	30	0	43	1.55
38119--38154	18	1.9	19	88	5	56	0	22	2	75	0.94
42389--42439	21	2.4	21	100	0	102	13	33	17	35	1.89
43628--43716	46	2.0	46	93	2	153	28	26	19	25	1.99
48172--48197	7	3.7	7	100	0	52	88	0	11	0	0.52
48804--48842	20	2.0	20	89	0	60	33	10	23	33	1.88
51992--52032	20	2.0	20	85	9	55	70	4	7	17	1.28
52002--52046	21	2.2	20	84	8	54	73	4	6	15	1.21
52021--52081	30	2.0	32	87	6	90	75	1	4	18	1.06
52015--52087	32	2.2	34	79	16	91	75	1	6	16	1.09
52348--52405	16	3.6	16	72	9	55	46	17	15	20	1.84
60841--60966	61	2.1	61	83	3	155	25	23	19	32	1.97
66949--66991	2	22.0	2	90	4	70	51	2	0	46	1.13
68560--68611	20	2.6	20	100	0	104	30	19	15	34	1.93
68646--68913	107	2.5	106	87	2	376	23	17	20	39	1.92

Tables:   1

The End!