genome.fa.s7526.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007526.1 Hibiscus syriacus cultivar Beakdansim tig00020999_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126340

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12130--12222	33	2.9	31	76	6	96	20	32	27	19	1.97
12404--12655	95	2.7	95	76	4	222	20	28	32	19	1.96
12520--12707	95	2.0	96	82	8	233	20	30	29	19	1.97
17481--17517	19	1.9	19	100	0	74	35	10	10	43	1.75
17477--17520	19	2.5	17	86	13	70	34	13	9	43	1.76
17851--17893	18	2.4	18	84	0	59	30	34	18	16	1.93
22702--22731	2	15.0	2	100	0	60	50	0	0	50	1.00
24152--24230	3	27.0	3	83	10	92	63	0	1	35	1.03
24691--25592	113	8.0	113	89	2	1305	28	18	15	37	1.91
24574--25578	226	4.4	226	87	3	1315	27	19	15	38	1.91
24574--25578	339	2.9	339	91	2	1530	27	19	15	38	1.91
27321--27540	75	2.9	75	88	0	305	32	22	14	30	1.94
30945--30970	2	13.0	2	100	0	52	50	0	0	50	1.00
32593--32653	12	4.8	12	76	11	59	57	6	13	22	1.59
32598--32652	27	2.0	27	89	0	83	58	7	12	21	1.59
32712--32753	7	6.0	7	78	10	50	54	14	16	14	1.71
34268--34305	15	2.5	15	100	0	76	13	26	13	47	1.79
35346--35419	39	1.9	38	83	8	96	44	1	4	50	1.29
35650--35675	2	13.0	2	100	0	52	50	0	0	50	1.00
37124--37227	3	35.0	3	80	9	106	61	0	2	35	1.11
37889--37918	8	3.8	8	100	0	60	10	26	40	23	1.86
40699--40803	32	3.2	32	83	1	129	19	31	27	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40812--41077	95	2.8	95	86	1	363	19	33	34	12	1.89
44997--45317	162	2.0	159	96	3	599	28	24	25	22	1.99
49932--50006	21	3.6	21	96	0	132	33	16	14	36	1.89
50013--50062	20	2.5	20	100	0	100	30	12	28	30	1.92
50564--51019	79	5.8	79	89	0	660	36	10	23	29	1.88
50811--50954	45	3.5	42	71	23	126	34	10	25	30	1.89
51446--51502	29	1.9	30	85	3	80	42	7	24	26	1.80
55611--55635	13	1.9	13	100	0	50	80	0	4	16	0.87
64909--64974	26	2.5	26	75	0	69	45	27	7	19	1.77
66178--66251	35	2.1	35	89	0	112	44	16	0	39	1.47
66250--66322	34	2.1	35	84	5	94	32	0	20	46	1.51
72607--72668	25	2.5	24	76	5	70	59	3	1	35	1.23
74629--74748	61	2.0	61	93	0	204	28	26	19	25	1.99
83183--83223	16	2.6	16	92	0	64	24	26	9	39	1.86
86888--86925	20	1.9	20	94	0	67	42	21	15	21	1.89
88196--88221	2	13.0	2	100	0	52	50	0	0	50	1.00
88206--88406	99	2.0	102	94	2	354	26	7	20	44	1.79
88924--88972	3	15.7	3	83	8	62	34	0	0	65	0.93
94475--94506	15	2.1	15	94	0	55	25	18	9	46	1.79
97155--97183	14	2.0	15	93	6	51	27	13	17	41	1.87
99842--99878	19	1.9	19	88	0	56	75	0	0	24	0.80
100063--100769	134	5.3	134	88	0	1020	33	20	17	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101397--101584	45	4.2	45	78	4	173	43	16	15	23	1.87
101567--101777	38	5.6	38	82	2	210	38	19	17	25	1.93
101560--101770	114	1.9	114	83	4	282	37	18	17	25	1.93
102555--102621	25	2.8	23	70	14	64	56	4	8	29	1.50
103531--103588	27	2.1	27	87	0	80	5	20	3	70	1.21
104343--104411	31	2.2	32	85	12	90	40	7	24	27	1.81
109678--109707	3	9.7	3	92	7	51	70	0	0	30	0.88
110428--110464	2	18.5	2	100	0	74	0	0	48	51	1.00
115634--115658	13	1.9	13	100	0	50	44	0	0	56	0.99
115989--116022	17	2.0	17	94	0	59	23	2	47	26	1.66
116945--116976	14	2.3	14	94	0	55	46	28	9	15	1.77

Tables:   1

The End!