genome.fa.s7537.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007537.1 Hibiscus syriacus cultivar Beakdansim tig00021094_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66803

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11835--11864	2	15.0	2	100	0	60	50	0	0	50	1.00
15139--15202	29	2.1	31	82	5	78	28	14	9	48	1.74
15895--16083	70	2.7	70	95	0	333	33	23	17	25	1.96
18908--18985	38	2.2	35	83	16	108	55	12	21	10	1.67
26484--26536	25	2.1	25	100	0	106	35	15	9	39	1.79
28445--28667	112	2.0	112	89	0	338	45	9	14	30	1.77
29246--29284	15	2.6	15	100	0	78	15	30	23	30	1.95
31978--32028	24	2.2	24	79	6	61	39	1	1	56	1.22
32797--32855	2	30.0	2	96	3	111	50	0	0	49	1.00
37063--37234	60	2.9	59	80	9	154	40	3	22	33	1.71
38432--38589	21	7.6	21	79	8	171	31	24	21	22	1.99
38432--38608	83	2.1	82	81	10	200	31	23	21	23	1.98
38598--38762	21	7.9	21	77	6	147	26	20	22	30	1.98
38573--38696	62	2.0	62	86	9	173	29	21	20	29	1.98
42234--42346	60	1.9	60	87	3	165	41	14	10	33	1.80
44319--44363	21	2.1	21	87	0	63	46	24	0	28	1.53
49139--49217	23	3.4	23	76	11	72	15	24	25	35	1.94
50860--50895	16	2.3	16	90	4	56	52	11	0	36	1.37
50891--50919	2	15.0	2	92	7	51	48	0	0	51	1.00
50991--51027	19	1.9	19	100	0	74	27	10	5	56	1.55
51145--51169	7	3.6	7	100	0	50	0	0	12	88	0.53
51443--51921	181	2.6	180	89	2	717	42	13	15	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54119--54159	21	2.0	21	95	0	73	36	12	34	17	1.87
54172--54208	15	2.4	15	90	4	56	48	2	35	13	1.57
54208--54272	33	2.0	33	90	0	103	30	0	46	23	1.53
56058--56102	19	2.4	19	96	0	81	31	2	11	55	1.47
56454--57307	200	4.4	200	83	8	1058	37	13	15	33	1.87
56892--57244	179	2.0	180	90	1	566	37	13	15	33	1.88
58043--58072	2	15.0	2	100	0	60	50	0	0	50	1.00
60196--61330	200	5.8	199	85	6	1438	37	13	16	32	1.88
60720--60760	21	2.0	21	85	4	57	26	12	12	48	1.75
62026--62727	199	3.5	198	79	8	691	39	14	15	30	1.87
62764--62883	64	1.9	64	92	0	204	33	12	11	42	1.79

Tables:   1

The End!