genome.fa.s754.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000754.1 Hibiscus syriacus cultivar Beakdansim tig00001457_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  316703

Tables:   1   2   

This is table  2  of  2  ( 191 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195910--195981	30	2.4	30	92	0	117	23	20	25	30	1.99
196251--196292	2	21.0	2	95	0	75	47	0	2	50	1.14
197400--197438	19	2.0	20	95	5	71	51	17	15	15	1.77
197439--197476	20	1.9	20	88	0	58	13	18	18	50	1.78
197443--197518	33	2.3	33	86	6	100	14	18	19	47	1.83
197511--197578	20	3.4	20	86	8	93	17	19	26	36	1.94
197571--197608	20	1.9	20	100	0	76	15	10	23	50	1.75
197510--197598	40	2.2	40	80	4	99	16	16	25	40	1.90
198088--198185	21	4.7	21	79	0	97	23	35	17	23	1.95
198089--198178	42	2.1	45	85	6	123	22	37	16	23	1.93
199479--199515	14	2.6	14	100	0	74	29	0	21	48	1.50
199649--199712	20	3.2	20	90	0	101	46	20	17	15	1.83
199751--199839	20	4.4	20	92	0	142	26	20	21	31	1.98
199707--199881	94	1.9	93	84	3	235	25	17	21	36	1.95
199751--199881	20	6.8	20	80	10	139	26	17	21	34	1.95
199852--200270	140	3.0	140	97	0	788	43	15	12	28	1.83
201360--201386	14	1.9	14	100	0	54	7	18	29	44	1.77
201361--201393	14	2.5	13	90	9	50	6	21	24	48	1.72
201586--201639	24	2.2	24	93	0	90	40	20	18	20	1.91
201586--201653	24	2.8	24	84	0	64	38	20	17	23	1.93
202458--202568	20	5.5	20	80	6	134	22	17	29	30	1.96
202458--202569	41	2.8	41	87	4	147	22	16	29	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202587--202628	21	2.0	21	85	0	57	38	19	19	23	1.93
202674--202710	19	1.9	19	88	0	56	21	16	27	35	1.94
204370--204416	24	2.0	24	91	8	78	17	17	25	40	1.90
205437--205475	16	2.6	16	88	8	55	35	10	0	53	1.35
205659--205751	2	46.5	2	100	0	186	50	0	0	49	1.00
214526--214575	24	2.1	24	85	7	66	26	2	12	60	1.43
215050--215083	17	2.1	16	88	5	50	14	8	0	76	1.01
221424--221472	20	2.5	20	80	3	55	16	18	0	65	1.28
224771--224820	24	2.1	24	85	7	66	26	2	12	60	1.43
225295--225328	17	2.1	16	88	5	50	14	8	0	76	1.01
230841--230880	21	1.9	22	85	10	57	55	7	7	30	1.56
231337--231407	35	2.0	35	84	13	92	33	11	25	29	1.91
231957--231985	15	1.9	15	100	0	58	34	10	20	34	1.87
231958--231992	15	2.3	15	90	0	52	42	8	20	28	1.81
233224--233357	67	2.0	67	86	0	187	22	20	19	37	1.95
236394--236475	35	2.3	36	82	14	98	53	6	1	39	1.34
242984--243022	21	1.9	20	84	5	51	35	20	12	30	1.90
245795--245838	21	2.1	21	86	0	61	29	27	27	15	1.96
245865--245909	22	2.0	22	86	4	63	31	33	26	8	1.87
246592--246715	31	4.0	31	79	13	130	29	20	19	30	1.97
246703--246774	30	2.4	30	92	0	117	23	20	23	31	1.98
268451--268492	22	2.0	22	85	4	59	9	19	2	69	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277910--278080	41	4.2	40	80	8	186	29	14	16	39	1.88
277913--278080	80	2.1	81	85	4	223	29	14	17	38	1.89
278306--278358	20	2.7	20	74	11	63	28	33	15	22	1.94
278383--278676	60	4.9	61	84	4	373	41	23	14	20	1.88
278346--278678	20	16.6	20	75	10	234	41	23	14	20	1.89
278790--278840	22	2.3	22	100	0	102	17	45	17	19	1.86
279254--279287	14	2.4	14	90	0	50	8	17	20	52	1.71
279226--279273	20	2.5	20	93	3	80	10	18	22	47	1.79
279236--279302	34	2.0	34	90	0	107	8	17	22	50	1.74
281475--281566	21	4.4	21	78	5	69	25	34	19	20	1.96
283003--283056	28	1.9	28	84	0	72	31	0	20	48	1.50
283003--283039	14	2.6	14	100	0	74	29	0	21	48	1.50
282949--283105	80	2.0	78	93	2	269	30	1	17	49	1.58
283161--283198	20	1.9	20	94	0	67	44	26	15	13	1.83
283560--283594	6	5.8	6	93	0	61	20	0	17	62	1.32
285184--285225	17	2.5	17	100	0	84	26	19	7	47	1.74
286849--286980	19	6.7	19	82	8	131	26	12	22	37	1.90
286851--286961	19	5.7	19	87	4	134	29	12	22	35	1.91
286851--286958	39	2.8	39	85	7	139	29	12	22	35	1.91
286851--286961	58	1.9	59	83	5	145	29	12	22	35	1.91
286949--287015	20	3.3	20	78	0	80	16	14	26	41	1.87
286891--287035	40	3.7	42	79	12	132	22	15	23	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287010--287055	20	2.3	20	96	0	83	21	19	21	36	1.95
293902--293938	18	2.1	18	100	0	74	62	16	5	16	1.51
295745--295791	22	2.1	23	88	4	69	23	12	25	38	1.90
308334--308367	17	2.0	17	100	0	68	17	17	29	35	1.93
312693--312737	20	2.2	20	96	0	81	26	24	13	35	1.92

Tables:   1   2

The End!