genome.fa.s7541.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007541.1 Hibiscus syriacus cultivar Beakdansim tig00021126_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67378

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7391--7600	33	6.6	33	74	15	174	15	30	36	17	1.91
7459--7497	20	2.0	20	100	0	78	17	30	35	15	1.91
7369--7604	125	1.9	126	98	0	456	15	32	35	16	1.91
7683--7766	32	2.6	33	88	3	118	16	29	35	17	1.93
7854--7935	33	2.5	33	88	2	112	17	30	34	18	1.94
7495--8068	168	3.4	170	94	2	988	16	32	33	16	1.92
19171--19853	149	4.8	142	88	4	807	20	34	21	23	1.97
19458--19853	136	2.9	137	89	1	582	21	35	21	21	1.96
20532--20752	32	6.6	32	74	15	151	16	30	36	16	1.91
20532--20754	33	6.6	33	75	13	195	16	30	36	16	1.91
20509--20796	138	2.1	137	97	0	549	17	32	34	15	1.91
20532--21227	169	4.1	169	90	5	993	16	32	34	16	1.92
20648--21227	169	3.4	169	94	1	1013	16	32	33	16	1.92
20838--20922	33	2.6	33	88	1	118	16	30	35	17	1.92
21010--21091	33	2.5	33	84	2	103	17	29	34	19	1.94
20479--21058	306	1.9	305	88	4	868	16	33	34	16	1.91
33690--33722	11	3.0	11	90	0	57	15	36	39	9	1.79
34112--34300	32	5.6	31	75	14	162	15	30	35	17	1.91
34090--34308	105	2.1	105	97	0	411	15	32	34	16	1.91
34041--34477	137	3.2	134	76	13	476	16	33	33	16	1.91
34195--34775	169	3.4	170	95	0	1015	16	33	33	17	1.92
34385--34469	33	2.6	33	90	1	127	15	29	35	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33959--34603	273	2.4	266	74	16	678	15	33	34	16	1.91
34557--34638	33	2.5	33	88	2	112	17	30	34	18	1.94
43026--43215	33	5.6	33	77	11	188	15	31	35	17	1.91
43005--43223	106	2.1	104	95	1	393	15	32	34	16	1.91
43109--43680	167	3.4	166	92	3	938	16	32	33	16	1.92
43298--43382	33	2.6	33	90	1	127	15	29	35	20	1.93
51502--51534	11	3.0	11	90	0	57	15	36	39	9	1.79
51921--52101	33	5.4	33	73	15	156	16	30	35	17	1.92
51899--52101	103	1.9	106	95	3	367	15	32	34	16	1.91
52191--52270	33	2.5	32	87	4	108	16	28	36	18	1.93
52007--52569	167	3.4	167	91	5	886	16	32	34	16	1.92
52356--52437	33	2.5	33	88	2	112	17	30	34	18	1.94
65850--65882	11	3.0	11	90	0	57	15	36	39	9	1.79
66265--66449	31	5.6	32	76	11	158	16	29	36	17	1.92
66244--66459	104	2.1	103	94	3	380	16	31	35	16	1.91
66535--66616	32	2.6	32	86	5	105	17	28	36	18	1.93
66701--66779	32	2.5	31	83	4	97	17	29	35	17	1.93
66351--66913	164	3.4	167	92	4	941	16	31	34	16	1.92

Tables:   1

The End!