Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007573.1 Hibiscus syriacus cultivar Beakdansim tig00021583_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76379

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26--6030
7
867.4
7
96
3
11249
42
42
0
14
1.45
6027--6627
7
86.6
7
98
1
1167
28
57
14
0
1.38
11207--11247
21
2.0
21
90
0
64
43
26
14
14
1.84
18372--18408
15
2.3
17
81
13
51
64
5
2
27
1.28
20541--20595
26
2.1
26
86
0
74
49
20
3
27
1.65
20630--20680
26
2.0
26
96
0
93
50
15
5
27
1.67
20703--20790
36
2.5
34
75
10
88
42
1
3
53
1.25
21274--21315
21
2.0
20
86
4
57
42
0
2
54
1.13
21470--21501
14
2.3
14
100
0
64
46
18
6
28
1.73
22856--22892
15
2.3
17
81
13
51
64
5
2
27
1.28
24838--24892
26
2.1
26
86
0
74
50
18
1
29
1.57
24927--24977
26
2.0
26
96
0
93
50
15
5
27
1.67
25280--25308
14
2.1
14
100
0
58
37
0
6
55
1.27
25482--25525
21
2.0
23
86
8
65
47
0
4
47
1.22
27960--28057
21
4.5
22
68
22
66
52
1
4
42
1.27
28048--28072
13
1.9
13
100
0
50
48
4
0
48
1.20
32344--32380
15
2.3
17
81
13
51
64
5
2
27
1.28
35048--35089
21
2.0
20
86
4
57
42
0
2
54
1.13
35361--35403
20
2.2
20
83
8
52
55
0
2
41
1.12
35349--35506
51
3.4
50
66
28
130
51
2
3
41
1.33
35343--35535
88
2.2
88
95
1
345
51
3
3
41
1.37
35553--35586
16
2.1
16
88
5
50
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38433--38492
3
18.7
3
80
16
50
66
0
5
28
1.12
38607--38806
37
5.8
36
85
12
219
47
5
5
42
1.47
38633--38806
33
5.2
33
84
14
207
46
4
5
43
1.46
38796--38829
2
17.0
2
87
0
50
52
2
0
44
1.16
38832--38878
10
4.6
10
77
12
51
72
2
2
23
1.06
39409--40458
80
12.9
83
78
6
1073
24
19
25
30
1.98
39409--40439
161
6.4
164
90
4
1276
24
19
25
30
1.98
46971--47034
3
20.7
3
82
17
53
67
0
4
28
1.11
47043--47371
38
8.8
37
84
6
362
47
4
3
44
1.42
47044--47371
36
8.8
36
84
6
363
46
4
3
44
1.42
47359--47396
2
19.5
2
89
5
60
50
2
0
47
1.15
47399--47445
10
4.6
10
77
12
51
72
2
2
23
1.06
50778--50875
21
4.5
22
68
22
66
52
1
4
42
1.27
50866--50890
13
1.9
13
100
0
50
48
4
0
48
1.20
51153--51196
19
2.2
20
84
4
54
56
0
0
43
0.99
51176--51239
26
2.5
26
73
19
62
51
1
1
45
1.20
51221--51249
13
2.1
14
93
6
51
51
0
0
48
1.00
51112--51225
60
2.0
58
84
10
153
54
0
1
42
1.16
55385--55522
13
9.3
13
76
22
114
15
44
23
15
1.85
55385--55499
31
3.7
30
96
2
203
16
46
22
13
1.82
55406--55522
44
2.7
44
87
11
156
15
45
23
16
1.85
55381--55488
18
6.6
18
76
20
128
16
48
22
12
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55499--55530
7
4.4
7
92
7
55
12
34
28
25
1.92
56837--56872
18
2.0
18
88
0
54
52
0
16
30
1.44
57964--58095
48
2.8
48
77
13
146
21
15
18
43
1.88
57981--58095
24
4.8
24
86
6
153
22
16
19
41
1.90
58032--58104
24
3.0
24
86
4
76
21
16
17
43
1.87
59754--59790
15
2.3
17
81
13
51
64
5
2
27
1.28
61834--61888
26
2.1
26
86
0
74
50
18
1
29
1.57
61923--61973
26
2.0
26
96
0
93
50
15
5
27
1.67
62541--62619
31
2.5
30
80
17
88
45
0
0
54
0.99
65115--65212
49
2.0
49
93
0
169
38
19
14
27
1.90
68392--68430
2
19.5
2
100
0
78
51
0
0
48
1.00
73081--73130
26
1.9
26
100
0
100
36
12
12
40
1.79

Tables:   1

The End!