genome.fa.s7574.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007574.1 Hibiscus syriacus cultivar Beakdansim tig00021590_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161221

Tables:   1   2   

This is table  1  of  2  ( 126 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
787--1129	128	2.6	129	88	5	498	38	5	9	46	1.60
3449--3590	43	3.4	43	72	14	143	21	19	33	26	1.96
3483--3611	40	3.2	40	72	14	127	19	18	35	26	1.95
3446--3630	83	2.2	83	88	1	282	21	18	34	25	1.96
3721--3860	73	1.9	73	86	2	201	36	10	18	34	1.86
3962--4082	37	3.3	37	78	7	104	38	9	14	38	1.77
8134--8195	30	2.1	30	90	0	97	58	11	14	16	1.64
10666--10738	27	2.7	27	97	0	137	34	27	10	27	1.90
15340--15395	6	9.3	6	92	0	85	44	23	16	16	1.86
23419--23465	21	2.2	21	88	0	67	42	10	2	44	1.51
25424--25462	3	13.0	3	94	0	60	61	0	0	38	0.96
25710--26337	113	5.5	113	90	4	777	29	17	13	39	1.89
27055--27419	94	4.0	92	83	9	471	33	21	15	28	1.94
27186--27419	83	2.7	87	86	7	305	36	22	14	25	1.93
27098--27419	177	1.8	177	96	0	599	35	22	15	26	1.94
28667--28760	7	13.7	7	77	13	90	0	18	0	81	0.68
28667--28765	15	6.6	15	75	16	98	0	19	0	80	0.71
36090--36121	15	2.1	15	94	0	55	46	6	18	28	1.73
41530--41565	3	12.0	3	100	0	72	66	0	0	33	0.92
42157--42290	29	4.5	29	76	7	124	23	34	25	16	1.95
42187--42303	62	1.9	61	87	1	171	21	34	27	17	1.95
42910--42953	21	2.1	21	91	0	70	29	0	15	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42930--42983	28	1.9	28	96	0	99	29	0	12	57	1.36
46062--46159	49	2.3	39	71	28	106	41	0	13	44	1.43
46052--46682	60	11.3	49	81	16	499	41	0	12	46	1.41
46150--46176	10	2.7	10	100	0	54	40	0	18	40	1.51
46090--46170	21	3.3	24	69	23	71	40	0	14	44	1.46
46225--46491	21	13.3	21	61	16	66	41	0	11	46	1.41
46101--46524	60	7.1	60	96	0	764	41	0	12	46	1.41
46101--46686	120	5.1	119	90	7	919	41	0	12	46	1.41
46329--46416	10	8.7	10	72	15	56	40	0	13	45	1.44
46400--46686	108	2.7	109	96	1	515	40	0	11	47	1.40
46633--46702	25	3.1	22	79	16	63	38	0	11	50	1.39
46462--46682	49	4.3	49	84	13	273	41	0	11	47	1.39
46654--46701	14	3.6	14	81	16	66	35	0	16	47	1.47
46048--46686	168	3.7	168	85	8	928	41	0	12	46	1.41
49007--49110	30	3.4	30	84	11	124	49	9	1	39	1.47
49355--49409	18	3.4	18	65	31	52	52	9	0	38	1.33
49424--49501	37	2.2	36	82	15	99	48	8	0	42	1.34
49521--49585	28	2.3	29	82	10	82	46	15	1	36	1.55
49667--49704	9	4.2	9	83	10	51	65	2	0	31	1.06
49731--49791	26	2.4	25	72	8	59	3	36	3	57	1.31
49879--49913	11	3.1	11	84	8	52	40	20	20	20	1.92
49973--50056	29	2.9	28	89	7	123	15	29	29	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50237--50283	23	2.0	23	100	0	94	34	31	12	21	1.91
50321--50376	29	1.9	29	100	0	112	10	25	42	21	1.85
51621--51660	10	4.0	10	86	0	53	27	32	0	40	1.57
51706--51757	9	6.1	9	76	13	56	32	1	1	63	1.16
51705--51754	17	3.0	17	91	2	75	34	2	4	60	1.27
51714--51759	16	2.9	16	87	6	58	30	2	2	65	1.16
53748--53797	3	16.7	3	91	0	55	34	28	28	10	1.89
54037--54121	35	2.5	33	76	14	82	27	7	10	55	1.60
63931--63977	24	2.0	24	100	0	94	55	4	19	21	1.60
65336--65432	44	2.2	44	84	0	131	29	14	22	32	1.94
67974--68062	13	6.3	13	81	14	97	16	44	21	16	1.86
67970--68041	18	3.6	18	74	25	72	16	50	20	12	1.78
67970--68041	31	2.4	28	78	19	81	16	50	20	12	1.78
67987--68047	31	2.0	31	96	0	113	16	47	21	14	1.82
68023--68069	15	3.3	14	88	5	60	17	38	23	21	1.93
70532--70640	24	4.5	24	75	4	103	20	15	16	47	1.82
72785--72873	13	6.3	13	79	14	88	17	44	20	16	1.86
72781--72852	18	3.6	18	74	25	72	18	50	19	12	1.78
72798--72858	31	2.0	31	93	0	104	18	47	19	14	1.82
72834--72880	8	6.5	8	72	22	50	17	38	23	21	1.93
72834--72880	15	3.3	14	88	5	60	17	38	23	21	1.93
75341--75449	24	4.5	24	75	4	103	20	15	16	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77588--77676	13	6.3	13	81	14	97	16	43	21	17	1.88
77584--77655	18	3.6	18	70	25	63	16	48	20	13	1.80
77584--77656	31	2.4	31	83	4	85	16	47	20	15	1.82
77637--77683	8	6.5	8	72	22	50	17	38	23	21	1.93
77587--77675	44	2.0	45	91	4	144	16	43	21	17	1.88
77601--77660	31	1.9	31	96	0	111	16	45	21	16	1.86
77637--77683	15	3.3	14	88	5	60	17	38	23	21	1.93
80146--80254	24	4.5	24	75	4	103	20	15	16	47	1.82
82073--82179	21	5.2	21	81	7	112	30	15	18	34	1.93
87945--88030	44	2.0	44	86	4	120	31	16	22	30	1.95
93379--93416	2	19.0	2	100	0	76	50	0	0	50	1.00
93871--93917	12	3.6	13	78	15	53	65	0	12	21	1.25
93869--94002	47	2.8	48	74	15	127	71	0	7	20	1.14
93883--93938	23	2.4	23	74	11	60	71	0	10	17	1.14
93945--94039	20	4.3	20	70	19	66	70	1	1	27	1.01
93994--94018	2	12.5	2	100	0	50	52	0	0	48	1.00
94006--94118	40	2.9	38	73	12	104	67	2	1	28	1.14
95254--95344	39	2.4	36	87	5	119	27	7	23	41	1.81
95330--95563	36	6.6	36	78	13	227	39	13	20	26	1.90
95628--95694	35	1.9	35	93	0	116	38	14	20	25	1.91
95630--95712	35	2.3	35	81	6	96	43	13	18	25	1.86
95601--95838	102	2.4	101	89	1	361	36	12	18	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95747--96012	87	3.1	87	95	1	462	35	12	18	33	1.88
96269--96587	106	3.0	106	89	0	451	22	20	22	34	1.97
97159--97270	32	3.5	32	85	4	129	37	19	13	29	1.90
97177--97265	32	2.8	32	89	1	135	37	20	12	30	1.89
98203--98340	69	2.0	69	89	0	213	25	13	23	37	1.92
98414--98463	14	3.8	13	75	19	50	4	14	8	74	1.20
98413--98465	27	2.0	27	85	10	74	5	13	7	73	1.23
101516--101549	15	2.2	16	89	5	52	76	0	2	20	0.92
101619--101719	2	54.0	2	75	20	58	59	1	0	38	1.09
101721--101777	24	2.4	24	77	14	64	70	3	5	21	1.22
103774--103813	16	2.4	16	88	12	55	52	0	0	47	1.00
107942--107990	24	2.0	25	88	4	73	44	2	14	38	1.56
114541--114606	19	3.5	19	73	26	61	72	0	4	22	1.02
114541--114591	20	2.5	21	81	15	63	72	0	5	21	1.05
114547--114608	8	7.5	8	74	25	58	72	0	4	22	1.03
114541--114620	21	4.2	20	72	19	55	70	0	6	23	1.10
115378--115501	25	5.0	24	66	15	63	59	12	2	25	1.46
115378--115504	44	3.2	42	67	28	114	59	12	2	25	1.45
115296--115507	76	2.9	76	88	4	292	57	12	1	28	1.43
122132--122226	24	4.0	24	78	5	102	21	13	15	49	1.79
123646--123681	18	2.0	18	89	10	56	13	33	27	25	1.94
130509--130561	25	2.1	25	100	0	106	33	3	7	54	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131654--131705	2	26.5	2	81	18	65	46	0	3	50	1.20
134279--134306	10	2.8	10	100	0	56	14	0	0	85	0.59
135221--135264	20	2.3	19	85	11	63	47	9	22	20	1.78
135404--135477	36	2.1	37	87	7	109	47	5	1	45	1.34
143418--143889	59	8.0	59	93	0	739	31	20	15	33	1.93
150639--150679	16	2.6	16	96	0	73	51	26	12	9	1.70
152818--152873	3	18.0	3	85	7	76	62	0	0	37	0.95
153078--153303	123	1.8	123	85	1	319	25	16	14	43	1.86
153219--153860	113	5.7	113	89	4	902	28	18	14	38	1.90
153219--153864	230	2.9	226	87	4	939	28	18	14	38	1.90

Tables:   1   2