genome.fa.s7575.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007575.1 Hibiscus syriacus cultivar Beakdansim tig00021597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174574

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1981--2039	31	1.9	30	82	3	73	32	25	5	37	1.78
5640--5821	63	2.9	63	84	0	229	46	7	30	15	1.73
13711--13868	29	5.4	29	88	3	203	31	1	16	50	1.56
13711--13867	57	2.7	57	88	2	215	31	1	16	50	1.56
30369--30395	14	1.9	14	100	0	54	29	11	29	29	1.91
39230--39310	33	2.5	33	91	2	128	22	34	28	14	1.94
39470--39698	95	2.4	95	86	2	300	21	32	32	13	1.91
39470--39750	95	3.0	95	80	4	255	21	30	33	14	1.93
39996--40038	22	2.0	22	85	0	59	20	41	18	18	1.90
52767--52851	32	2.7	32	92	0	143	21	35	28	15	1.93
52931--53052	32	3.8	32	82	2	129	21	35	27	16	1.94
53040--53253	95	2.3	95	85	1	277	19	29	34	16	1.94
53086--53285	95	2.1	95	85	1	267	19	29	35	16	1.94
60311--60391	33	2.5	33	89	2	119	22	34	27	16	1.95
60549--60778	95	2.4	95	86	2	320	20	34	31	13	1.91
61077--61119	22	2.0	22	90	0	68	18	41	20	18	1.90
73725--73841	32	3.7	32	92	0	189	23	32	28	16	1.96
73926--74042	32	3.7	32	81	2	128	22	34	27	16	1.95
73694--74104	201	2.0	202	83	2	522	20	32	29	17	1.96
74067--74242	95	1.9	95	85	0	244	20	29	34	15	1.94
95353--95582	95	2.4	95	90	1	363	18	35	33	12	1.89
105702--105837	32	4.2	32	84	2	139	18	33	28	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105801--106005	95	2.2	95	85	1	286	19	31	34	14	1.92
106026--106106	33	2.5	32	81	2	90	22	34	27	16	1.95
106161--106295	32	4.2	32	86	2	173	19	36	28	16	1.93
106280--106453	95	1.8	95	88	2	269	16	28	39	15	1.89
114437--114564	32	4.0	32	85	1	157	20	34	28	16	1.94
114615--114669	22	2.5	22	90	0	83	14	41	29	14	1.85
114755--114843	33	2.8	32	78	1	115	20	34	28	16	1.94
114755--115001	65	3.7	63	70	17	187	19	31	30	17	1.95
114889--115023	32	4.2	32	86	0	171	19	36	28	16	1.93
114988--115237	95	2.6	95	90	0	383	18	32	36	13	1.89
114988--115268	95	3.0	93	87	4	357	18	31	36	13	1.90
115500--115538	11	3.5	11	85	0	60	12	41	30	15	1.85
115492--115542	22	2.3	22	100	0	102	13	41	33	11	1.81
128069--128145	33	2.4	33	86	6	104	23	35	24	16	1.95
128202--128305	32	3.2	32	85	6	147	16	36	31	15	1.90
128269--128557	95	3.0	94	89	2	400	17	32	37	12	1.88
141635--141770	32	4.2	32	85	0	164	18	35	30	16	1.93
141735--141936	95	2.1	95	86	3	282	17	31	37	14	1.90
142096--142207	32	3.5	32	86	1	152	21	31	30	16	1.96
141473--142330	456	1.9	456	88	1	1319	18	32	32	16	1.93
142191--142376	95	2.0	95	82	4	232	19	31	34	14	1.92
155449--155529	33	2.5	33	87	2	110	20	34	28	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155582--155668	32	2.7	31	89	6	138	18	37	29	13	1.89
155731--155865	63	2.1	63	97	0	252	14	39	36	10	1.80
155607--155842	95	2.5	96	69	12	223	15	35	35	13	1.86
155900--156033	32	4.2	32	90	0	187	18	36	29	15	1.92
155794--156182	95	4.1	95	71	16	354	17	34	35	12	1.88
164384--164464	33	2.5	32	85	2	99	20	33	28	17	1.95
164519--164618	32	3.1	31	85	5	128	18	38	30	14	1.89
164665--164800	63	2.2	63	97	0	254	13	38	36	11	1.81
164542--164777	95	2.5	96	70	11	232	16	36	35	12	1.86
164835--164968	32	4.2	32	91	0	187	17	35	29	16	1.92
164728--165117	95	4.1	95	71	17	349	16	33	35	13	1.88
173014--173094	33	2.5	33	87	2	110	20	34	28	16	1.94
173149--173249	32	3.2	31	87	5	130	17	37	30	13	1.89
173294--173426	62	2.1	62	95	2	241	13	39	37	9	1.78
173088--173496	154	2.6	157	83	8	512	16	34	36	12	1.87
173461--173594	33	4.2	32	87	4	180	18	37	28	15	1.92

Tables:   1

The End!