genome.fa.s7589.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007589.1 Hibiscus syriacus cultivar Beakdansim tig00021849_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  223780

Tables:   1   2   

This is table  1  of  2  ( 135 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20015--20205	97	2.0	98	82	3	233	34	13	17	35	1.89
23065--23140	33	2.3	33	100	0	152	52	17	14	15	1.75
25243--25378	32	4.3	32	78	3	132	27	26	25	20	1.99
27382--27454	33	2.2	33	90	4	112	30	34	16	19	1.94
28337--28364	8	3.5	8	100	0	56	10	0	0	89	0.49
30325--30415	39	2.3	39	84	1	119	32	5	23	38	1.78
32811--32865	24	2.3	24	74	0	56	32	21	21	23	1.98
34849--34882	14	2.4	14	100	0	68	11	20	52	14	1.73
37316--37410	39	2.4	39	80	3	111	37	22	18	21	1.94
37316--37440	39	3.2	39	77	4	110	36	22	20	20	1.96
38428--38509	27	3.0	27	92	1	137	25	3	21	48	1.66
39280--39304	13	1.9	13	100	0	50	48	16	4	32	1.64
41521--41564	20	2.2	20	91	0	70	22	18	22	36	1.95
47322--47367	22	2.0	22	83	12	56	52	13	2	32	1.52
51136--51174	18	2.2	18	95	0	69	0	7	12	79	0.93
51142--51186	10	4.7	10	89	5	58	0	4	8	86	0.69
56709--56754	22	2.0	22	83	12	56	52	13	2	32	1.52
57854--57879	13	2.0	13	100	0	52	69	15	0	15	1.20
58644--58716	30	2.5	29	90	2	110	16	28	24	30	1.96
60974--61009	16	2.2	16	100	0	72	36	13	5	44	1.68
61242--61302	31	2.0	31	93	0	104	9	27	22	39	1.86
63071--63136	26	2.7	24	69	6	60	34	3	1	60	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70397--70453	28	2.1	27	96	3	105	35	19	10	35	1.86
71250--71275	3	8.7	3	100	0	52	65	0	0	34	0.93
73531--73559	14	2.1	14	100	0	58	20	13	17	48	1.81
74515--74606	47	2.0	47	95	0	166	21	27	4	46	1.70
78435--78634	96	2.1	96	83	0	256	43	16	12	28	1.83
81609--81707	2	51.5	2	84	15	138	45	0	2	52	1.12
81648--81785	66	2.2	66	77	17	132	37	0	4	57	1.18
81609--81847	10	27.9	8	76	17	100	39	1	2	56	1.25
83075--83111	15	2.5	15	91	4	58	18	8	0	72	1.08
84661--84768	33	3.3	33	84	0	135	25	2	30	41	1.69
90616--90751	35	3.9	35	74	11	125	32	16	20	30	1.95
90616--90753	71	1.9	71	86	0	195	31	17	21	29	1.96
99279--99314	16	2.2	17	90	5	56	41	13	25	19	1.88
99374--99421	23	2.1	23	84	0	60	41	6	16	35	1.74
99471--99987	198	2.6	197	84	4	628	30	15	13	40	1.86
102687--102734	19	2.5	19	96	0	87	52	10	6	31	1.60
104313--104899	199	3.0	198	83	3	750	32	16	14	37	1.88
107145--107186	20	2.1	20	86	0	57	14	9	26	50	1.73
107215--107432	44	4.9	44	87	8	309	43	6	19	30	1.77
107296--107370	25	3.2	25	64	30	65	40	8	20	32	1.81
107215--107432	89	2.5	89	90	5	345	43	6	19	30	1.77
110980--111008	13	2.2	13	100	0	58	41	6	6	44	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111321--111354	6	5.7	6	89	0	50	20	32	2	44	1.67
112137--112190	20	2.7	20	100	0	108	22	35	16	25	1.95
112177--112233	22	2.7	21	89	5	80	24	26	21	28	1.99
114067--114157	24	3.8	24	82	2	112	38	19	16	25	1.92
116193--116245	7	7.4	7	82	16	65	28	26	32	13	1.93
116195--116236	15	2.7	15	92	3	66	30	26	28	14	1.95
116224--116279	13	4.3	13	86	0	76	21	21	41	16	1.90
116184--116262	8	10.6	8	73	22	66	25	26	34	13	1.94
116222--116279	26	2.2	26	93	0	98	20	22	41	15	1.90
121625--121703	21	3.7	21	81	8	97	30	25	18	25	1.98
121626--121721	21	4.7	20	79	12	88	28	27	19	25	1.99
122442--122466	12	2.1	12	100	0	50	24	40	0	36	1.55
124476--124534	22	2.8	21	90	7	93	27	27	20	25	1.99
125557--126196	201	3.2	200	89	2	896	31	16	13	38	1.88
128457--128506	15	3.1	15	81	13	55	26	6	38	30	1.80
128999--129054	24	2.4	23	88	8	87	51	3	0	44	1.18
129997--130126	59	2.2	59	90	0	197	33	4	15	46	1.66
130114--130312	29	6.8	28	89	5	256	36	3	17	42	1.66
130102--130351	58	4.3	58	83	3	175	33	3	17	45	1.66
133611--134244	176	3.6	177	82	8	796	27	16	13	42	1.86
133881--134175	162	1.8	162	93	0	509	29	17	12	39	1.87
135529--135575	23	2.0	23	88	8	69	38	2	2	57	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135528--135575	25	2.0	25	88	12	73	37	2	2	58	1.22
139281--139356	3	25.0	3	82	12	93	32	1	0	65	1.01
139293--139355	19	3.0	20	77	20	67	33	0	0	66	0.92
141793--141975	58	3.2	57	74	9	183	50	15	1	31	1.54
141762--141975	114	1.9	116	87	2	315	50	15	1	32	1.55
141770--141933	85	1.9	86	89	2	258	48	15	1	34	1.53
141776--141962	29	6.5	29	82	6	166	50	14	1	33	1.52
141895--141970	29	2.6	29	89	0	98	57	14	2	25	1.50
142046--142129	19	4.4	19	93	0	141	17	30	30	20	1.96
149353--149505	29	5.4	29	74	13	122	48	17	1	32	1.59
149364--149442	27	3.0	26	75	12	70	49	10	1	39	1.45
150044--150084	22	1.9	21	85	5	55	29	2	2	65	1.18
150187--150226	21	1.9	21	84	0	53	25	2	2	70	1.13
150355--150395	2	20.5	2	94	0	73	51	0	0	48	1.00
152586--152672	43	2.0	44	88	2	131	31	11	22	34	1.90
155965--156024	8	7.6	8	83	10	79	76	0	23	0	0.78
155965--156024	15	3.9	15	81	14	77	76	0	23	0	0.78
155966--156024	7	7.7	7	83	12	64	76	0	23	0	0.79
155953--156024	24	3.0	24	84	8	94	75	0	23	1	0.89
159537--159705	75	2.3	75	88	0	239	31	15	21	30	1.95
160999--161100	22	4.6	22	96	0	186	32	18	12	36	1.89
161462--162144	113	5.9	111	80	13	660	39	15	19	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161955--162010	17	3.2	17	68	26	53	46	7	25	21	1.76
161832--162147	120	2.6	120	88	5	445	40	15	18	25	1.90
162210--162269	16	3.4	17	68	22	52	50	10	21	18	1.76
162497--162589	3	31.0	3	85	10	120	32	1	0	66	0.99
162492--162588	33	3.1	31	91	5	142	30	1	0	68	0.97
163848--163936	22	4.0	21	68	18	65	31	4	3	60	1.33
166019--166148	60	2.2	59	85	1	170	27	16	26	29	1.97
166211--166252	20	2.1	20	86	0	57	19	4	19	57	1.58
166721--166785	33	1.9	34	93	3	114	24	21	24	29	1.99
172673--173128	54	8.5	54	89	0	619	21	25	21	32	1.98
174420--174457	8	4.8	8	87	9	51	5	13	0	81	0.85
174436--174509	22	3.5	19	71	25	58	8	17	0	74	1.05
174418--174493	37	2.1	36	85	9	102	7	15	0	76	1.01
174428--174493	27	2.5	27	80	9	73	7	16	0	75	1.02
174460--174489	15	1.9	16	93	6	53	13	23	0	63	1.29
184133--184201	25	2.8	25	90	0	111	36	28	5	28	1.80
189949--189992	19	2.2	21	88	8	65	50	15	0	34	1.45
190506--190578	33	2.2	33	92	0	119	26	17	19	36	1.94
195249--195369	38	3.3	37	76	19	137	21	15	23	39	1.91
199632--199688	22	2.6	22	89	8	82	38	0	3	57	1.16
201648--201693	22	2.1	22	100	0	92	17	45	23	13	1.83
202676--202763	26	3.3	26	81	10	99	42	6	0	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202677--202788	52	2.2	52	81	15	126	40	5	0	54	1.23
202677--202783	51	2.1	52	81	11	123	41	5	0	53	1.24
203508--203570	2	31.5	2	100	0	126	50	0	0	49	1.00
206217--206242	2	13.0	2	100	0	52	0	50	0	50	1.00
207143--207182	16	2.4	18	80	16	50	40	0	40	20	1.52
207337--207409	27	2.7	26	79	16	76	46	2	2	47	1.31
208702--208749	2	24.0	2	100	0	96	50	0	0	50	1.00
210455--210510	3	19.0	3	78	10	62	62	0	1	35	1.06
210709--211338	134	4.7	134	88	0	882	25	18	30	25	1.98
211118--211193	40	1.9	39	86	2	107	22	18	38	21	1.94

Tables:   1   2