genome.fa.s7596.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007596.1 Hibiscus syriacus cultivar Beakdansim tig00021919_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102974

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1028--1080	22	2.6	21	85	14	67	50	1	1	45	1.23
1042--1100	18	3.6	16	76	15	66	52	0	1	45	1.10
1796--1827	13	2.4	14	94	5	57	28	0	0	71	0.86
2022--2055	18	1.9	17	88	5	50	35	0	2	61	1.11
2045--2096	2	28.0	2	81	14	67	44	0	0	55	0.99
2032--2114	12	7.7	10	81	12	62	40	0	3	55	1.17
2077--2114	6	6.7	6	93	3	53	36	0	7	55	1.29
2050--2114	18	3.8	16	84	13	53	41	0	4	53	1.21
2326--2562	117	2.0	117	96	1	440	43	9	12	34	1.75
7493--7555	26	2.6	22	80	20	81	52	12	3	31	1.55
7498--7549	26	2.0	26	100	0	104	53	11	3	30	1.54
9949--9979	16	1.9	16	93	0	53	38	0	32	29	1.57
10661--10740	42	1.9	42	84	2	108	36	20	16	27	1.93
10736--10761	13	2.0	13	100	0	52	30	15	23	30	1.95
10763--10860	36	2.7	36	91	0	151	22	19	19	38	1.93
10872--10965	42	2.3	41	78	7	100	32	19	20	27	1.96
11078--11171	42	2.3	40	75	10	100	29	19	22	28	1.98
11021--11485	223	2.0	226	83	6	584	32	18	15	33	1.92
25073--25127	26	2.1	26	83	10	67	25	7	7	60	1.49
28295--28341	21	2.2	21	92	0	85	21	25	17	36	1.94
28230--28347	20	5.8	21	76	5	89	28	27	16	27	1.97
28484--28534	22	2.3	22	96	0	93	25	43	9	21	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28819--28857	20	2.0	20	84	0	51	15	17	20	46	1.84
30816--30853	4	9.5	4	94	0	67	26	0	0	73	0.83
32462--32602	66	2.2	64	80	9	164	31	2	17	49	1.58
32882--32965	39	2.2	39	95	0	150	17	15	19	47	1.83
33240--33282	12	3.6	12	77	0	50	46	18	2	32	1.62
33795--33819	12	2.1	12	100	0	50	0	28	0	72	0.86
33994--34047	24	2.2	24	83	6	65	42	16	16	24	1.88
34941--35009	19	3.6	19	80	9	77	26	14	23	36	1.93
35057--35128	19	3.8	18	72	17	56	26	13	29	30	1.94
45452--45554	31	3.3	31	100	0	206	35	10	5	47	1.62
48263--48327	29	2.2	30	91	2	105	33	15	10	40	1.82
49923--49976	19	3.0	18	83	8	74	68	0	1	29	1.00
50542--50593	25	2.0	26	92	3	88	78	0	9	11	0.95
50558--50600	20	2.2	20	91	0	68	79	0	9	11	0.95
52777--53150	135	2.8	133	77	7	321	31	15	15	38	1.88
53493--53775	38	7.8	37	69	14	146	37	8	15	37	1.79
53707--53785	38	2.1	38	83	2	97	37	10	18	32	1.85
56696--56736	21	1.9	22	90	5	66	56	17	17	9	1.67
58486--58535	25	2.0	25	85	14	68	60	10	6	24	1.51
60123--60161	17	2.4	17	82	4	53	10	12	17	58	1.61
63806--63847	17	2.7	15	79	13	50	11	7	19	61	1.52
67631--67687	29	1.9	30	85	3	80	54	10	17	17	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69505--70719	4	307.8	4	97	2	2318	25	24	0	50	1.50
71433--71475	21	2.0	21	81	0	50	30	30	25	13	1.94
71502--71539	20	1.9	20	88	0	58	23	34	31	10	1.89
72012--72327	150	2.1	150	93	1	537	26	17	21	34	1.96
72295--72339	23	2.0	23	90	0	72	22	26	26	24	2.00
73161--73368	104	2.0	104	100	0	416	40	16	14	28	1.88
73894--73941	21	2.2	21	82	10	53	56	12	14	16	1.68
76618--76863	132	1.9	132	84	1	332	29	18	19	32	1.96
79122--79168	17	2.7	18	86	3	60	80	6	4	8	1.00
79122--79193	18	4.1	18	72	18	53	79	4	4	12	1.02
79139--79196	13	4.6	12	76	17	55	79	3	3	13	0.99
79308--79411	51	2.1	50	82	8	122	59	8	11	20	1.58
81650--81691	20	2.0	21	95	4	77	38	19	14	28	1.90
81656--81699	20	2.2	20	87	0	61	36	20	11	31	1.88
82059--82122	33	1.9	33	81	12	78	32	14	28	25	1.94
84177--84229	20	2.7	20	78	0	61	37	11	18	32	1.87
85569--85755	36	5.1	36	75	12	166	41	10	13	34	1.78
85590--85755	37	4.5	37	72	11	128	40	10	13	34	1.80
85565--85756	73	2.6	74	82	7	230	41	10	13	33	1.80
86134--86212	38	2.1	38	85	2	106	39	10	17	32	1.83
91422--91822	163	2.5	163	87	2	536	29	20	13	36	1.91
92291--92327	19	1.9	19	88	0	56	16	8	0	75	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93897--94101	71	2.9	71	85	1	250	25	17	15	41	1.89
98723--98756	15	2.3	15	89	0	50	38	11	5	44	1.65

Tables:   1

The End!