genome.fa.s7602.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007602.1 Hibiscus syriacus cultivar Beakdansim tig00022053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50450

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3896--4026	31	4.2	32	84	6	169	16	31	35	17	1.92
3750--4131	93	4.1	93	71	19	326	13	36	32	17	1.88
4061--4193	62	2.1	62	95	2	241	10	37	38	13	1.79
4258--4369	32	3.5	32	93	3	190	15	29	36	18	1.92
3927--4346	157	2.7	155	78	10	471	13	35	34	16	1.88
4258--4503	64	3.7	65	69	18	193	15	31	33	19	1.93
3794--4430	343	1.9	343	93	3	1111	13	35	34	17	1.88
4416--4503	33	2.8	31	80	3	104	13	28	37	20	1.91
12732--12773	21	2.0	21	85	4	57	9	35	40	14	1.78
12749--12881	32	4.2	32	88	2	187	15	30	35	18	1.92
12749--12881	65	2.1	63	87	2	185	15	30	35	18	1.92
12938--13037	29	3.4	30	64	20	75	11	36	39	14	1.81
12915--13044	60	2.2	60	94	4	226	10	38	37	13	1.79
13090--13221	32	4.2	32	93	0	203	14	31	36	18	1.90
13275--13354	32	2.5	32	87	4	108	16	28	33	21	1.95
21533--21920	95	4.1	95	72	7	374	12	36	33	17	1.88
21682--21815	32	4.2	32	88	1	187	15	30	35	17	1.92
21872--21975	31	3.3	32	68	16	101	11	34	40	13	1.81
21850--21982	62	2.1	62	98	0	257	10	37	38	13	1.79
22029--22161	32	4.2	32	91	2	196	14	30	36	18	1.90
21581--22222	347	1.9	347	95	0	1178	12	34	34	17	1.88
22208--22296	33	2.8	32	82	1	115	14	28	37	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30478--30862	93	4.1	94	72	11	347	12	36	33	17	1.88
30625--30757	32	4.2	32	88	2	187	15	30	35	18	1.92
30625--30757	65	2.1	63	87	2	185	15	30	35	18	1.92
30815--30918	31	3.3	32	68	15	92	11	34	40	13	1.81
30792--30925	62	2.1	63	97	1	252	10	37	38	13	1.79
30720--31008	157	1.8	158	88	5	451	12	36	35	15	1.85
30972--31104	32	4.2	32	91	2	196	14	30	36	18	1.90
31150--31238	33	2.8	32	82	1	115	14	28	37	20	1.92
39421--39807	95	4.1	94	72	8	379	12	36	33	17	1.88
39570--39702	32	4.2	32	88	2	187	15	30	35	18	1.92
39570--39702	65	2.1	63	87	2	185	15	30	35	18	1.92
39760--39863	31	3.3	32	68	15	92	11	34	40	13	1.81
39737--39870	62	2.1	63	97	1	252	10	37	38	13	1.79
39916--40047	32	4.2	32	92	3	205	14	31	36	18	1.90
39601--40018	156	2.7	158	80	8	519	13	34	34	17	1.89
40094--40181	33	2.7	31	81	6	113	14	28	36	20	1.92
42606--42643	17	2.3	17	95	4	69	18	10	39	31	1.85
48507--48638	31	4.2	32	86	4	178	15	31	34	18	1.92
48696--48798	31	3.3	32	68	17	92	11	34	39	13	1.81
48673--48805	62	2.1	63	95	2	243	10	37	38	13	1.79
48432--48794	188	1.9	188	86	6	511	12	34	34	17	1.88
48601--48887	156	1.8	156	89	4	454	12	36	35	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48852--48983	32	4.2	32	92	3	205	14	31	36	18	1.90
48407--49043	344	1.9	344	95	1	1152	13	35	34	17	1.89
49029--49117	33	2.8	32	82	1	115	14	28	37	20	1.92

Tables:   1

The End!