genome.fa.s7614.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007614.1 Hibiscus syriacus cultivar Beakdansim tig00022689_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46043

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
872--955	32	2.6	32	84	5	107	20	34	28	16	1.94
872--958	31	2.7	32	82	10	106	19	36	27	16	1.93
798--1308	167	3.1	169	93	3	862	16	33	33	17	1.92
1040--1124	33	2.6	33	90	1	127	20	35	29	15	1.93
1207--1391	32	5.6	31	75	15	142	16	35	31	16	1.91
1233--1482	104	2.4	102	83	8	283	15	34	34	15	1.89
1781--1812	11	2.9	11	95	0	55	9	40	37	12	1.75
17040--18029	149	6.9	147	85	6	1055	20	34	21	23	1.96
17203--18029	137	5.9	137	86	5	908	20	34	21	23	1.96
17047--18029	286	3.4	281	82	8	1123	20	34	21	23	1.96
18700--18784	33	2.6	33	88	1	118	20	34	29	16	1.94
18869--18953	33	2.6	33	90	1	127	20	35	29	15	1.93
18668--19140	169	2.8	168	94	1	817	16	34	32	16	1.92
19037--19227	32	5.7	32	75	15	181	17	36	30	15	1.91
19135--19224	33	2.8	32	88	3	126	17	35	32	14	1.90
19029--19246	104	2.1	105	94	2	386	16	33	33	16	1.91
19069--19377	104	3.1	103	83	9	320	16	34	34	14	1.89
19615--19646	11	2.9	11	95	0	55	9	40	37	12	1.75
27673--27757	33	2.6	33	88	1	118	20	34	29	16	1.94
27537--28113	166	3.4	170	94	2	1006	16	33	32	16	1.92
27839--27923	33	2.6	33	90	1	127	20	35	29	15	1.93
28007--28195	32	5.6	32	77	12	182	17	35	30	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28108--28195	31	2.8	32	85	3	115	18	36	30	14	1.91
27999--28217	104	2.1	105	95	1	395	16	34	32	15	1.91
28040--28348	104	3.1	104	84	8	331	16	34	33	14	1.89
28585--28616	11	2.9	11	95	0	55	9	40	37	12	1.75
36634--36718	33	2.6	33	88	1	118	20	34	29	16	1.94
36498--37075	169	3.4	170	94	1	1015	17	33	32	16	1.92
36802--36886	33	2.6	33	90	1	127	20	35	29	15	1.93
36971--37159	33	5.6	33	76	13	188	17	35	31	15	1.91
36963--37181	104	2.1	106	95	1	397	16	34	33	15	1.90
37004--37312	104	3.1	102	83	9	325	16	34	34	13	1.89
37549--37580	11	2.9	11	95	0	55	9	40	37	12	1.75
45604--45681	30	2.5	31	83	6	95	19	35	28	16	1.93
45604--45685	32	2.6	31	86	3	103	20	35	28	15	1.94
45469--46036	164	3.4	165	92	4	916	17	34	32	16	1.92
45733--45851	32	3.8	31	81	10	118	17	38	27	15	1.91
45931--46011	32	2.5	32	90	4	119	17	37	29	16	1.91

Tables:   1

The End!