genome.fa.s7619.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007619.1 Hibiscus syriacus cultivar Beakdansim tig00022981_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64053

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726--911	95	2.0	95	92	0	309	11	36	34	16	1.86
875--975	32	3.2	32	87	2	141	13	30	38	16	1.88
1022--1110	33	2.8	32	82	1	115	14	28	37	20	1.92
9264--9649	95	4.1	95	72	8	356	12	36	33	17	1.88
9412--9545	32	4.2	32	88	1	187	15	30	35	17	1.92
9601--9705	32	3.3	32	68	13	101	11	34	40	13	1.80
9580--9712	63	2.1	61	95	2	239	10	37	38	13	1.79
9759--9889	32	4.2	31	87	6	174	13	31	36	18	1.90
9943--10022	32	2.5	32	87	4	108	16	28	33	21	1.95
18160--18546	94	4.1	95	71	8	365	12	36	33	17	1.88
18308--18440	32	4.2	32	88	2	187	15	30	35	18	1.92
18308--18440	65	2.1	63	87	2	185	15	30	35	18	1.92
18498--18602	32	3.3	32	68	13	101	11	34	40	13	1.80
18475--18609	63	2.1	63	98	0	261	10	37	39	13	1.79
18475--18572	31	3.1	31	66	13	92	9	37	39	13	1.76
18232--18598	190	1.9	191	85	6	512	12	34	35	17	1.87
18656--18788	32	4.2	32	91	2	196	14	30	36	18	1.90
18339--18759	158	2.7	159	80	7	532	13	34	34	17	1.89
18207--18849	348	1.8	348	95	0	1180	12	34	34	17	1.88
18835--18923	33	2.8	32	82	1	115	14	28	37	20	1.92
27087--27474	95	4.1	94	72	8	372	12	36	33	17	1.88
27236--27369	32	4.2	32	88	1	187	15	30	35	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27427--27529	31	3.4	31	68	16	97	11	34	39	13	1.81
27404--27536	62	2.1	62	98	0	257	10	37	38	13	1.79
27332--27618	156	1.8	157	89	5	456	12	36	35	15	1.85
27583--27714	32	4.2	32	92	3	205	14	31	36	18	1.90
27761--27848	33	2.7	31	81	6	113	14	28	36	20	1.92
27132--27774	346	1.9	343	95	1	1123	12	34	34	17	1.88
36089--36203	32	3.6	32	89	2	176	16	29	33	20	1.94
36260--36362	31	3.3	32	68	17	92	11	34	39	13	1.81
36237--36369	62	2.1	63	95	2	243	10	37	38	13	1.79
36166--36451	156	1.8	155	88	5	443	12	37	34	15	1.85
36416--36547	32	4.2	32	92	3	205	14	31	36	18	1.90
36593--36680	33	2.7	31	81	6	113	14	28	36	20	1.92
44822--45205	94	4.1	93	71	8	355	13	36	33	17	1.88
44970--45101	31	4.2	32	86	4	178	15	31	34	18	1.92
45158--45260	31	3.4	31	68	16	97	11	34	39	13	1.81
45135--45267	62	2.1	62	98	0	257	10	37	38	13	1.79
44894--45256	188	1.9	189	85	6	504	12	34	34	17	1.88
45064--45349	156	1.8	156	88	5	445	12	37	34	15	1.85
45314--45445	32	4.2	32	92	3	205	14	31	36	18	1.90
44853--45505	344	1.9	344	94	1	1157	13	35	33	17	1.89
45492--45579	33	2.7	31	81	6	113	14	28	36	20	1.92
53870--54002	32	4.2	32	88	2	187	15	30	35	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53870--54002	65	2.1	63	87	2	185	15	30	35	18	1.92
54056--54160	32	3.3	32	68	13	101	11	34	40	13	1.80
54034--54167	63	2.1	63	97	1	252	10	37	38	13	1.79
53795--54156	186	1.9	188	84	6	484	12	34	35	17	1.87
53965--54249	157	1.8	154	87	5	421	11	36	35	15	1.85
54214--54345	32	4.2	32	92	3	205	14	31	36	18	1.90
54400--54478	32	2.5	32	85	6	99	16	29	32	21	1.95
62625--63009	95	4.1	94	72	8	361	12	36	33	17	1.88
62774--62906	32	4.2	32	88	2	187	15	30	35	18	1.92
62774--62906	65	2.1	63	87	2	185	15	30	35	18	1.92
62962--63064	31	3.3	32	68	17	92	11	34	39	13	1.81
62940--63071	61	2.1	62	97	1	248	10	37	37	13	1.80
62940--63034	30	3.1	30	66	19	88	9	38	37	13	1.78
63118--63249	32	4.2	32	90	3	187	14	31	36	18	1.90
62673--63311	344	1.9	346	94	2	1142	12	35	34	17	1.89
63302--63384	32	2.6	32	86	5	114	15	27	34	21	1.94

Tables:   1

The End!