genome.fa.s7623.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007623.1 Hibiscus syriacus cultivar Beakdansim tig00023094_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49968

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6580--6712	32	4.2	32	88	2	187	15	30	35	18	1.92
6580--6712	65	2.1	63	87	2	185	15	30	35	18	1.92
6770--6873	31	3.3	32	68	15	92	11	34	40	13	1.81
6747--6880	62	2.1	63	97	1	252	10	37	38	13	1.79
6505--6869	189	1.9	190	85	6	508	12	34	35	17	1.87
6927--7058	32	4.2	32	92	3	205	14	31	36	18	1.90
6611--7029	157	2.7	158	80	8	528	13	34	34	17	1.89
6463--7119	346	1.9	346	95	0	1181	13	35	34	17	1.89
7105--7193	33	2.8	32	82	1	115	14	28	37	20	1.92
15384--15771	95	4.1	94	72	8	372	12	36	33	17	1.88
15533--15666	32	4.2	32	88	1	187	15	30	35	17	1.92
15724--15825	31	3.4	31	68	18	97	11	35	39	13	1.82
15701--15832	61	2.1	62	97	1	248	10	37	37	13	1.80
15629--15915	155	1.8	157	88	5	449	12	36	35	15	1.85
15879--16011	32	4.2	32	91	2	196	14	30	36	18	1.90
16058--16146	33	2.8	32	82	1	115	14	28	37	20	1.92
24330--24716	95	4.1	94	72	8	379	12	36	33	17	1.88
24479--24611	32	4.2	32	88	2	187	15	30	35	18	1.92
24479--24611	65	2.1	63	87	2	185	15	30	35	18	1.92
24669--24771	31	3.4	31	68	16	97	11	34	39	13	1.81
24646--24778	62	2.1	62	98	0	257	10	37	38	13	1.79
24574--24861	156	1.8	158	88	5	451	12	36	35	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24825--24957	32	4.2	32	91	2	196	14	30	36	18	1.90
24825--25091	64	4.0	65	71	16	217	14	32	33	19	1.92
24361--25017	346	1.9	346	94	1	1174	13	35	34	17	1.89
25004--25091	33	2.7	31	81	6	113	14	28	36	20	1.92
33282--33668	95	4.1	94	71	8	363	12	36	33	17	1.88
33431--33562	32	4.2	32	88	3	187	15	31	34	18	1.92
33431--33562	65	2.1	62	87	4	183	15	31	34	18	1.92
33620--33724	32	3.3	32	68	13	101	11	34	40	13	1.80
33597--33731	63	2.1	63	98	0	261	10	37	39	13	1.79
33597--33694	31	3.1	31	66	13	92	9	37	39	13	1.76
33778--33909	32	4.2	32	92	3	205	14	31	36	18	1.90
33461--33880	158	2.7	159	80	8	532	13	34	34	17	1.89
33461--34044	158	3.6	156	75	11	459	13	34	34	17	1.90
33313--33970	347	1.9	347	95	0	1183	13	35	34	17	1.89
33956--34044	33	2.8	32	82	1	115	14	28	37	20	1.92
42225--42611	95	4.1	94	72	8	379	12	36	33	17	1.88
42374--42506	32	4.2	32	88	2	187	15	30	35	18	1.92
42374--42506	65	2.1	63	87	2	185	15	30	35	18	1.92
42564--42665	31	3.4	31	68	18	97	11	35	39	13	1.82
42541--42672	61	2.1	62	97	1	248	10	37	37	13	1.80
42469--42754	155	1.8	156	89	5	454	12	37	34	15	1.85
42719--42850	32	4.2	32	92	3	205	14	31	36	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42897--42984	33	2.7	31	81	6	113	14	28	36	20	1.92

Tables:   1

The End!