genome.fa.s7627.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007627.1 Hibiscus syriacus cultivar Beakdansim tig00023286_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62768

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1955--1987	11	3.0	11	90	0	57	15	36	39	9	1.79
2371--2560	33	5.6	33	77	11	188	15	31	35	17	1.91
2350--2568	106	2.1	104	95	1	393	15	33	33	16	1.91
2644--2726	33	2.5	33	90	1	123	15	28	34	20	1.94
2812--2893	33	2.6	32	86	5	112	17	29	32	20	1.95
2454--3030	168	3.4	168	94	1	1005	16	33	32	17	1.92
10916--10948	11	3.0	11	90	0	57	15	36	39	9	1.79
11335--11523	32	5.6	33	76	13	179	15	31	34	17	1.92
11313--11531	104	2.1	106	95	1	397	15	33	33	16	1.91
11442--11523	33	2.5	33	92	2	130	15	30	36	17	1.91
11417--11995	169	3.4	169	95	0	1027	16	33	33	17	1.92
11607--11691	33	2.6	33	90	1	127	15	29	35	20	1.93
11779--11860	33	2.5	33	88	2	112	17	30	34	18	1.94
19860--19892	11	3.0	11	90	0	57	15	36	39	9	1.79
20276--20463	33	5.5	33	77	12	184	15	31	35	17	1.92
20254--20472	106	2.1	105	95	1	395	15	33	33	16	1.91
20548--20632	33	2.6	33	90	1	127	15	29	35	20	1.93
20720--20801	33	2.5	33	88	2	112	17	30	34	18	1.94
20359--20936	168	3.4	169	95	1	1020	16	33	33	17	1.92
28830--28862	11	3.0	11	90	0	57	15	36	39	9	1.79
29252--29442	33	5.6	33	77	11	197	15	31	35	17	1.91
29230--29450	106	2.1	106	97	0	415	15	33	34	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29336--29913	169	3.4	167	94	1	1005	16	33	33	17	1.92
29527--29611	33	2.6	33	90	1	127	15	29	35	20	1.93
29698--29779	33	2.5	33	88	2	112	17	30	34	18	1.94
37816--37848	11	3.0	11	90	0	57	15	36	39	9	1.79
38231--38421	33	5.6	33	77	11	197	15	31	35	17	1.91
38210--38429	106	2.1	105	96	0	404	15	33	34	16	1.91
38315--38897	168	3.4	168	94	1	995	16	33	32	17	1.92
38505--38589	33	2.6	33	90	1	127	15	29	35	20	1.93
38676--38757	33	2.5	33	88	2	112	17	30	34	18	1.94
47202--47389	32	5.6	32	75	13	162	15	31	35	17	1.92
47180--47399	106	2.1	105	96	0	404	15	33	34	16	1.91
47474--47558	33	2.6	33	90	1	127	15	29	35	20	1.93
47286--47860	167	3.4	169	94	2	1011	16	33	33	17	1.92
47644--47728	33	2.6	33	88	1	118	17	31	32	17	1.94
55702--55734	11	3.0	11	90	0	57	15	36	39	9	1.79
56119--56308	33	5.6	33	77	12	197	15	31	35	17	1.91
56097--56316	105	2.1	106	96	0	406	15	33	34	16	1.91
56390--56474	33	2.6	33	90	1	127	15	29	35	20	1.93
56203--56779	169	3.4	168	94	2	998	16	33	32	17	1.92
56562--56643	33	2.5	33	88	2	112	17	30	34	18	1.94

Tables:   1

The End!