Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007629.1 Hibiscus syriacus cultivar Beakdansim tig00023454_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120129

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--6599
7
969.4
7
91
6
7798
37
42
6
14
1.70
7578--7659
14
6.4
11
87
12
56
24
63
12
0
1.28
19--7629
7
1123.6
7
90
6
7623
36
44
7
12
1.70
7691--7834
7
20.4
7
85
13
174
27
59
13
0
1.35
7761--7894
7
19.4
7
87
6
170
26
59
13
0
1.39
7843--7929
14
6.3
14
93
1
95
34
51
6
6
1.55
7877--7936
7
8.6
7
92
0
102
40
46
1
11
1.50
7934--7996
7
9.0
7
100
0
126
14
57
28
0
1.38
8082--8143
31
2.0
31
93
0
106
37
16
11
35
1.84
9678--9721
21
2.1
21
95
0
79
47
2
0
50
1.13
11829--11853
6
4.2
6
100
0
50
48
36
0
16
1.46
12041--12084
20
2.2
20
91
0
70
22
20
27
29
1.99
13206--13384
65
2.8
65
97
0
340
30
20
11
38
1.87
13500--13575
20
3.8
20
85
1
98
23
21
25
30
1.99
14296--14505
104
2.0
104
94
0
366
27
15
24
32
1.95
16553--16584
15
2.1
15
94
0
55
31
6
3
59
1.38
23124--23157
18
1.9
17
88
5
50
55
5
5
32
1.48
24298--24339
23
1.9
23
85
9
61
35
19
11
33
1.88
27750--27792
21
2.0
21
81
0
50
27
30
25
16
1.97
28897--29055
30
5.3
30
93
2
230
23
18
24
33
1.97
32189--32903
352
2.0
353
96
3
1333
35
17
17
29
1.93
34234--34258
13
1.9
13
100
0
50
68
0
24
8
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42651--43069
210
2.0
211
99
0
822
22
16
18
41
1.90
48155--48198
21
2.0
23
86
8
65
47
4
0
47
1.22
48366--48394
14
2.1
14
100
0
58
55
6
0
37
1.27
50327--50382
19
2.9
21
76
15
57
51
0
0
48
1.00
50327--50375
19
2.5
20
81
15
59
51
0
0
48
1.00
50348--50413
34
2.0
33
85
8
89
56
1
1
40
1.18
50409--50459
26
2.0
26
96
0
93
29
3
15
50
1.62
50494--50548
26
2.1
26
86
0
74
27
3
20
49
1.65
50989--51016
3
9.3
3
100
0
56
32
0
0
67
0.91
58310--58378
21
3.3
21
83
4
77
50
2
0
46
1.16
58309--58369
21
3.0
21
85
2
88
50
3
0
45
1.17
58431--58525
25
3.8
26
72
17
92
44
3
0
52
1.17
58436--58538
34
2.9
34
79
12
93
43
2
0
53
1.15
58778--58806
13
2.1
14
93
6
51
48
0
0
51
1.00
58802--58908
49
2.2
47
83
5
133
43
1
1
52
1.22
58434--59245
361
2.2
359
87
5
1156
37
8
8
45
1.64
59143--59167
13
1.9
13
100
0
50
48
0
4
48
1.20
59202--59232
15
2.0
16
93
6
55
35
0
0
64
0.94
59220--59262
21
2.0
21
95
0
77
41
2
0
55
1.12
61706--61749
21
2.0
23
86
8
65
47
4
0
47
1.22
63883--63946
24
2.6
25
76
11
62
56
0
0
43
0.99
64091--64145
26
2.1
26
86
0
74
27
3
20
49
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64091--64154
26
2.5
26
80
10
69
28
3
20
48
1.64
66715--66748
18
1.9
17
88
5
50
55
5
5
32
1.48
67687--67735
23
2.1
23
88
0
71
32
16
10
40
1.82
67807--67848
23
1.9
23
85
9
61
35
19
11
33
1.88
70652--70694
21
2.0
21
81
0
50
27
30
25
16
1.97
71849--71909
30
2.0
30
100
0
122
27
16
22
32
1.96
76855--76879
11
2.3
11
100
0
50
44
0
0
56
0.99
77584--78003
211
2.0
211
99
0
822
22
17
18
41
1.90
83089--83132
21
2.0
23
86
8
65
47
4
0
47
1.22
83300--83328
14
2.1
14
100
0
58
55
6
0
37
1.27
85273--85348
34
2.3
33
84
8
93
53
1
1
43
1.17
85344--85394
26
2.0
26
96
0
93
29
3
15
50
1.62
85438--85492
26
2.1
26
83
6
67
23
3
25
47
1.68
85922--85946
3
8.3
3
100
0
50
32
0
0
68
0.90
93235--93303
21
3.3
21
83
4
77
50
2
0
46
1.16
93234--93294
21
3.0
21
85
2
88
50
3
0
45
1.17
93356--93450
25
3.8
26
72
17
92
44
3
0
52
1.17
93361--93463
34
2.9
34
79
12
93
43
2
0
53
1.15
93702--93730
13
2.1
14
93
6
51
48
0
0
51
1.00
93726--93832
49
2.2
47
83
5
133
43
1
1
52
1.22
94067--94091
13
1.9
13
100
0
50
48
0
4
48
1.20
94108--94158
19
2.7
20
81
6
61
47
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94152--94194
21
2.0
21
95
0
77
41
2
0
55
1.12
95271--95314
21
2.0
23
86
8
65
47
4
0
47
1.22
97654--97708
26
2.1
26
86
0
74
27
3
20
49
1.65
97654--97717
26
2.5
26
80
10
69
28
3
20
48
1.64
100268--100302
18
1.9
18
88
0
52
57
5
5
31
1.46
101021--101065
23
1.9
24
82
13
58
28
2
4
64
1.25
101235--101288
23
2.3
23
80
0
63
31
16
11
40
1.84
101360--101401
23
1.9
23
85
9
61
35
19
11
33
1.88
104195--104237
21
2.0
21
81
0
50
27
30
25
16
1.97
105362--105446
30
2.8
31
87
3
102
23
16
25
34
1.95
105390--105451
30
2.1
30
100
0
124
27
16
24
32
1.96
111114--111531
211
2.0
209
98
0
809
22
17
18
41
1.90
116602--116645
21
2.0
23
86
8
65
47
4
0
47
1.22
116809--116837
14
2.1
14
100
0
58
55
6
0
37
1.27
118777--118851
34
2.3
32
84
6
89
54
1
1
42
1.17
118847--118896
25
2.0
26
92
4
84
30
4
16
50
1.63
118931--118985
26
2.1
26
86
0
74
27
3
20
49
1.65

Tables:   1

The End!