genome.fa.s7631.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007631.1 Hibiscus syriacus cultivar Beakdansim tig00023668_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56310

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6343--6727	94	4.1	93	72	10	361	12	36	33	17	1.88
6490--6621	31	4.2	32	86	4	178	15	31	34	18	1.92
6415--6777	188	1.9	188	85	7	504	12	34	34	17	1.88
6584--6869	155	1.8	156	88	6	438	12	37	34	15	1.85
6656--6788	61	2.1	63	95	2	243	10	37	38	13	1.79
6834--6965	32	4.2	32	92	3	205	14	31	36	18	1.90
7011--7099	33	2.8	32	82	1	115	14	28	37	20	1.92
15275--15661	95	4.1	94	72	8	379	12	36	33	17	1.88
15424--15556	32	4.2	32	88	2	187	15	30	35	18	1.92
15424--15556	65	2.1	63	87	2	185	15	30	35	18	1.92
15614--15716	31	3.4	31	68	16	97	11	34	39	13	1.81
15591--15723	62	2.1	62	98	0	257	10	37	38	13	1.79
15519--15806	156	1.8	158	88	5	451	12	36	35	15	1.85
15770--15902	32	4.2	32	91	2	196	14	30	36	18	1.90
15306--15963	346	1.9	347	95	0	1185	13	35	34	17	1.89
15949--16037	33	2.8	32	82	1	115	14	28	37	20	1.92
24224--24612	95	4.1	95	72	7	383	12	36	33	16	1.87
24373--24506	32	4.2	32	88	1	187	15	30	35	17	1.92
24564--24668	32	3.3	32	68	13	101	11	34	40	13	1.80
24541--24675	63	2.1	63	98	0	261	10	37	39	13	1.79
24541--24638	31	3.1	31	66	13	92	9	37	39	13	1.76
24722--24854	32	4.2	32	91	2	196	14	30	36	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24405--24825	158	2.7	159	80	7	532	13	34	34	17	1.89
24901--24989	33	2.8	32	82	1	115	14	28	37	20	1.92
33322--33455	32	4.2	32	88	1	187	15	30	35	17	1.92
33512--33616	32	3.3	32	68	13	101	11	34	40	13	1.80
33490--33623	63	2.1	63	97	1	252	10	37	38	13	1.79
33418--33704	157	1.8	156	88	5	445	12	36	35	15	1.85
33669--33799	32	4.2	32	89	5	187	13	31	36	18	1.90
33669--33799	31	4.2	32	90	5	196	13	31	36	18	1.90
33354--33770	156	2.7	158	80	8	510	13	34	34	17	1.89
33677--33799	63	2.0	62	90	4	194	13	30	37	19	1.89
33354--33933	156	3.6	155	75	11	435	13	34	33	18	1.90
33846--33933	33	2.7	31	81	6	113	14	28	36	20	1.92
42209--42342	32	4.2	32	88	1	187	15	30	35	17	1.92
42377--42510	63	2.1	62	97	1	250	10	37	38	13	1.79
42377--42474	31	3.1	31	66	13	92	9	37	39	13	1.76
42400--42503	31	3.3	32	68	15	92	11	34	40	13	1.81
42400--42630	94	2.4	95	70	12	231	12	35	35	15	1.86
42305--42592	156	1.8	158	88	5	451	12	36	35	15	1.85
42556--42688	32	4.2	32	91	2	196	14	30	36	18	1.90
42556--42822	64	4.0	65	71	16	217	14	32	33	19	1.92
42735--42822	33	2.7	31	81	6	113	14	28	36	20	1.92
42105--42748	347	1.9	344	95	1	1116	12	34	34	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51150--51282	32	4.2	32	88	2	187	15	30	35	18	1.92
51150--51282	65	2.1	63	87	2	185	15	30	35	18	1.92
51340--51442	31	3.4	31	68	16	97	11	34	39	13	1.81
51317--51449	62	2.1	62	98	0	257	10	37	38	13	1.79
51495--51625	32	4.2	32	91	4	196	14	31	35	18	1.91
51672--51760	33	2.8	32	82	1	115	14	28	37	20	1.92

Tables:   1

The End!