genome.fa.s7633.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007633.1 Hibiscus syriacus cultivar Beakdansim tig00023687_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47280

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48--168	32	3.9	31	91	4	181	19	38	27	14	1.90
46--176	63	2.1	62	85	5	185	18	37	29	14	1.90
223--356	62	2.1	63	95	2	252	13	39	36	10	1.79
110--333	94	2.4	93	69	12	215	16	37	33	12	1.86
286--671	94	4.1	92	71	20	319	17	34	34	13	1.89
145--427	156	1.8	155	87	6	428	15	36	36	12	1.85
391--524	32	4.2	32	80	8	155	17	36	29	16	1.92
8838--8925	32	2.8	32	80	3	106	20	37	27	14	1.92
8972--9103	32	4.2	32	91	3	196	18	37	30	14	1.90
8970--9103	63	2.1	64	87	4	200	17	36	31	14	1.90
9191--9283	31	3.0	31	65	14	82	13	40	36	8	1.76
9150--9283	62	2.1	63	97	1	252	13	39	36	10	1.79
9035--9260	94	2.4	94	70	11	235	15	37	34	12	1.86
9318--9451	32	4.2	32	89	0	187	17	35	30	15	1.92
8911--9569	348	1.9	347	94	0	1176	17	34	34	13	1.88
9212--9600	95	4.1	95	72	9	369	16	33	36	12	1.87
17762--17848	32	2.8	32	77	7	97	20	37	26	14	1.92
17895--18026	32	4.2	32	92	2	196	18	37	30	14	1.90
18078--18183	32	3.4	32	68	13	103	13	41	33	11	1.80
18109--18206	31	3.1	31	66	13	92	13	39	37	9	1.76
18073--18206	63	2.1	63	97	1	252	13	39	36	10	1.79
17958--18183	94	2.4	94	72	9	251	15	37	34	12	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18241--18371	32	4.2	32	84	5	160	18	36	29	16	1.92
17925--18340	157	2.6	157	81	4	516	17	35	33	13	1.89
18135--18520	95	4.1	95	71	10	349	17	34	35	12	1.88
26693--26780	32	2.8	32	80	3	106	20	37	27	14	1.92
26827--26959	32	4.2	32	93	1	205	18	36	30	14	1.90
27011--27116	32	3.4	32	68	13	103	13	41	33	11	1.80
27006--27138	63	2.1	63	95	2	243	13	39	36	10	1.79
26891--27116	94	2.4	94	72	9	251	15	37	34	12	1.86
26923--27210	157	1.8	157	88	4	447	15	36	36	12	1.85
27173--27306	32	4.2	32	89	0	187	17	35	30	15	1.92
26766--27423	347	1.9	347	94	1	1176	17	34	34	13	1.89
27068--27454	94	4.1	95	71	11	335	17	34	35	12	1.88
35621--35709	33	2.8	32	82	1	115	20	37	28	14	1.92
35755--35886	32	4.2	32	91	3	196	18	37	30	14	1.90
35754--35886	63	2.1	64	87	4	198	18	36	30	14	1.90
35784--36202	158	2.7	158	80	8	521	17	35	34	13	1.89
35970--36067	31	3.1	31	66	13	92	13	39	37	9	1.76
35933--36067	63	2.1	63	98	0	261	13	39	37	10	1.79
35819--36044	95	2.4	94	70	11	235	15	37	34	12	1.86
35944--36310	190	1.9	191	85	6	512	17	35	34	12	1.87
36102--36234	32	4.2	32	87	2	178	18	36	30	15	1.92
36102--36234	63	2.1	65	85	2	180	18	36	30	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35695--36352	348	1.9	346	95	0	1181	17	34	34	13	1.89
35996--36383	95	4.1	95	72	10	360	17	34	36	12	1.88
44532--44619	31	2.8	31	80	3	104	20	37	27	14	1.92
44532--44779	64	3.8	63	68	21	177	20	33	31	15	1.93
44666--44797	32	4.2	32	92	2	196	18	37	30	14	1.90
44844--44975	62	2.1	62	94	4	232	13	40	35	10	1.79
44730--44952	93	2.4	92	69	12	211	16	37	33	12	1.86
44762--45047	155	1.8	157	88	4	445	15	36	35	12	1.85
44906--45288	93	4.1	93	71	11	341	16	34	35	13	1.88
45010--45142	32	4.2	32	87	2	178	18	36	30	15	1.92
45014--45141	63	2.0	64	86	1	177	18	35	29	15	1.92

Tables:   1

The End!