genome.fa.s7638.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007638.1 Hibiscus syriacus cultivar Beakdansim tig00023964_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52503

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449--534	30	2.7	31	83	7	111	19	38	27	13	1.90
581--712	32	4.2	32	92	2	196	18	37	30	14	1.90
759--888	59	2.1	62	90	8	214	13	40	34	10	1.80
677--957	153	1.8	152	87	6	424	16	37	34	12	1.86
923--1044	32	3.9	32	84	5	151	19	36	27	15	1.92
819--1197	93	4.1	94	70	17	290	17	34	34	13	1.88
1017--1197	94	2.0	91	87	5	265	16	35	35	12	1.86
9362--9450	33	2.8	32	82	1	115	20	37	28	14	1.92
9497--9629	32	4.2	32	93	1	205	18	36	30	14	1.90
9713--9810	31	3.1	31	66	13	92	13	39	37	9	1.76
9676--9810	63	2.1	63	98	0	261	13	39	37	10	1.79
9561--9787	95	2.4	94	71	10	244	15	37	34	12	1.85
9740--10123	94	4.1	93	72	18	344	17	34	35	13	1.88
9526--9945	158	2.7	158	81	5	535	17	35	34	13	1.89
9845--9977	32	4.2	32	87	2	178	18	36	30	15	1.92
18309--18397	33	2.8	32	82	1	115	20	37	28	14	1.92
18444--18576	32	4.2	32	93	1	205	18	36	30	14	1.90
18660--18757	31	3.1	31	66	13	92	13	39	37	9	1.76
18623--18757	63	2.1	63	98	0	261	13	39	37	10	1.79
18508--18734	95	2.4	94	71	10	244	15	37	34	12	1.85
18540--18829	158	1.8	158	89	4	460	15	35	36	12	1.85
18792--18925	32	4.2	32	89	0	187	17	35	30	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18686--19074	95	4.1	95	72	9	369	16	33	36	12	1.87
18383--19043	349	1.9	348	95	0	1196	17	34	34	13	1.88
27261--27349	33	2.8	32	82	1	115	20	37	28	14	1.92
27396--27528	32	4.2	32	93	1	205	18	36	30	14	1.90
27612--27709	31	3.1	31	66	13	92	13	39	37	9	1.76
27575--27709	63	2.1	63	98	0	261	13	39	37	10	1.79
27460--27686	95	2.4	94	71	10	244	15	37	34	12	1.85
27492--27781	158	1.8	158	89	4	460	15	35	36	12	1.85
27744--27877	32	4.2	32	89	0	187	17	35	30	15	1.92
27638--28026	95	4.1	95	72	9	369	16	33	36	12	1.87
27335--27995	349	1.9	348	95	0	1196	17	34	34	13	1.88
36204--36291	32	2.8	32	80	3	106	20	37	27	14	1.92
36337--36468	32	4.2	32	92	2	196	18	37	30	14	1.90
36519--36623	32	3.4	32	68	16	103	13	41	33	11	1.80
36514--36646	62	2.1	63	94	4	243	13	39	36	10	1.79
36401--36623	93	2.4	92	71	10	236	16	37	33	12	1.86
36433--36718	156	1.8	155	88	5	434	15	36	35	12	1.85
36681--36804	30	4.0	30	86	5	158	19	36	29	15	1.92
36681--36804	61	2.0	63	85	3	171	19	36	29	15	1.92
36576--36960	95	4.1	95	71	10	338	17	34	35	12	1.87
45087--45175	33	2.8	32	82	1	115	20	37	28	14	1.92
45221--45350	32	4.2	31	85	10	169	18	37	30	13	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45220--45350	60	2.1	61	84	8	176	18	37	30	13	1.90
45408--45520	58	1.9	59	98	1	219	15	45	30	8	1.77
45318--45597	153	1.8	153	89	4	440	16	36	35	11	1.85
45561--45692	63	2.1	63	86	1	183	18	36	29	15	1.92
45565--45691	32	4.0	31	86	3	164	18	36	29	15	1.92
45464--45827	93	3.9	93	71	10	326	18	35	33	12	1.89

Tables:   1

The End!